New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	724297 =	47 (0.890)	6 (0.120)	4/248	NT	12.9%	coding (334/861 nt)	PP_0618	branched‑chain amino acid ABC transporter permease
	?	NC_002947	724330 =	35 (0.680)					coding (301/861 nt)	PP_0618	branched‑chain amino acid ABC transporter permease

CCAGCAGCAGCCACAGGCCAATACCGATCAGCGCTGCGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATCAGCAG  >  NC_002947/724150‑724438                                                                                                                                                    |                                                                                                                                              ccAGCAGCAGCCACAGGCCAATACCGATCAGCGCTGCGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAg                                                                                                                                               >  3:122243/1‑148 (MQ=255)  cagcagcagCCACAGGCCAATACCGATCAGCGCTGCGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGc                                                                                                                                              <  1:296368/148‑1 (MQ=255)            gccgtcaccggcaacttctggctggcgctgctgattgcgccactggtggtggccgcgctggcctgggcggtcgagcgcctgttgatcaaacgcatctaccacctgccgcacaccttccagatcctcgtcaccctcgGCACCGACGCtt                                                                                                                                    <  1:190832‑M1/12‑1 (MQ=255)               aGGCCAATACCGATCAGCGCTGCGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTg                                                                                                                                >  6:151198/1‑149 (MQ=255)               aGGCCAATACCGATCAGCGCTGCCAACCCGATCAGGAACAAGCGGAAGTAGGGGTAGATGAAGTCTACTAGTATCAGAACACCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCAACCGGCCCCAAGATAAGCACCGACGCATCCtc                                                                                                                                >  6:195138/1‑148 (MQ=255)                 gCCAATACCGATCAGCGCTGCGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGga                                                                                                                              >  7:121000/1‑149 (MQ=255)                 gCCAATACCGATCAGCGCTGCGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGga                                                                                                                              >  3:273582/1‑149 (MQ=255)                   cAATACCGATCAGCGCTGCGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCACACCGGGCCCCAGATCAGc                                                                                                                                              >  6:188425/1‑131 (MQ=255)                     aTACCGATCAGCGCTGCGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAACGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGgatgat                                                                                                                          <  1:164990/149‑1 (MQ=255)                         cGATCAGCGCTGCGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAgc                                                                                                                      >  6:69905/1‑149 (MQ=255)                         cGATCAGCGATGCGAAGCCGATCAGTAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCCCCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAgc                                                                                                                      <  5:195138/149‑1 (MQ=255)                              aGCGCTGCGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGTCACGGCAATGTTTTTGCACACCTGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGAGAGAt                                                                                                                 >  4:244367/1‑149 (MQ=255)                                    gcgctgctgattgcgccactggtggtggccgcgctggcctgggcggtcgagcgcctgttgatcaaacgcatctaccacctgccgcacaccttccagatcctcgtcaccctcgGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGa                                                                                                            >  4:251596‑M1/113‑148 (MQ=255)                                    gcgctgctgattgcgccactggtggtggccgcgctggcctgggcggtcgagcgcctgttgatcaaacgcatctaccacctgccgcacaccttccagatcctcgtcaccctcgGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGa                                                                                                            >  7:192673‑M1/113‑148 (MQ=255)                                    gcgctgctgattgcgccactggtggtggccgcgctggcctgggcggtcgagcgcctgttgatcaaacgcatctaccacctgccgcacaccttccagatcctcgtcaccctcgGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGa                                                                                                            >  2:190832‑M1/113‑148 (MQ=255)                                     cGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCTCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAg                                                                                                           <  3:244367/148‑1 (MQ=255)                                     cGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAgg                                                                                                          <  4:181514/149‑1 (MQ=255)                                     cGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAgg                                                                                                          <  4:273582/149‑1 (MQ=255)                                     cGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAgg                                                                                                          <  8:121000/149‑1 (MQ=255)                                            gATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGgat                                                                                                                             >  7:149482/1‑123 (MQ=255)                                            gATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGgat                                                                                                                             <  8:149482/123‑1 (MQ=255)                                            gATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGAc                                                                                                     >  3:190170/1‑147 (MQ=255)                                            gATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGa                                                                                                   <  3:84518/149‑1 (MQ=255)                                             attgcgccactggtggtggccgcgctggcctgggcggtcgagcgcctgttgatcaaacgcatctaccacctgccgcacaccttccagatcctcgtcaccctcgGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAgg                                                                                                          >  1:178619‑M1/104‑141 (MQ=255)                                             attgcgccactggtggtggccgcgctggcctgggcggtcgagcgcctgttgatcaaacgcatctaccacctgccgcacaccttccagatcctcgtcaccctcgGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAgg                                                                                                          <  2:178619‑M1/38‑1 (MQ=255)                                              tCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGcgcg                                                                                                                   <  2:259160/131‑1 (MQ=255)                                              tCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGcgcg                                                                                                                   >  1:259160/1‑131 (MQ=255)                                                           gtagtaGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGgtgt                                                                                    >  7:27256/1‑149 (MQ=255)                                                           gtagtaGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGgtgt                                                                                    >  8:309979/1‑149 (MQ=255)                                                           gtagtaGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGgtgt                                                                                    <  5:69905/149‑1 (MQ=255)                                                                       gATGAAGTTGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGa                                                                                                   <  2:201690/122‑1 (MQ=255)                                                                       gATGAAGTAGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGa                                                                                                   >  1:201690/1‑122 (MQ=255)                                                                             gTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGc                                                                  <  8:27256/149‑1 (MQ=255)                                                                                    aGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGAt                                                           >  7:63619/1‑149 (MQ=255)                                                                                           gCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAg                                                                             <  3:257205/124‑1 (MQ=255)                                                                                           gCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAg                                                                             >  4:257205/1‑124 (MQ=255)                                                                                           gCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAgg                                                    >  4:143000/1‑149 (MQ=255)                                                                                                 cgcgCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTc                                               >  5:137707/1‑148 (MQ=255)                                                                                                  gcgcAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGa                                             >  5:27034/1‑149 (MQ=255)                                                                                                    gcAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGAcc                                           <  7:309979/149‑1 (MQ=255)                                                                                                      aGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGGACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAgg                                                    <  7:185068/138‑1 (MQ=255)                                                                                                      aGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGCGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAgg                                                    >  8:185068/1‑138 (MQ=255)                                                                                                        ttCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGccc                                       <  6:137707/149‑1 (MQ=255)                                                                                                                gCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAggtggt                                                                        <  1:220587/108‑1 (MQ=255)                                                                                                                gCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAggtggt                                                                        >  2:220587/1‑108 (MQ=255)                                                                                                                     gCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGgc                                                   >  7:158266/1‑124 (MQ=255)                                                                                                                     gCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGgc                                                   <  8:158266/124‑1 (MQ=255)                                                                                                                       aaTGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGAt                                                           >  5:14503/1‑114 (MQ=255)                                                                                                                       aaTGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGAt                                                           <  6:14503/114‑1 (MQ=255)                                                                                                                               tGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAg                 <  1:153249/148‑1 (MQ=255)                                                                                                                                 cccACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTgg              >  4:64018/1‑149 (MQ=255)                                                                                                                                  ccACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGgc             <  8:63619/149‑1 (MQ=255)                                                                                                                                      cGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTgg                                                                                           <  6:79055/67‑1 (MQ=255)                                                                                                                                      cGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTgg                                                                                           >  5:79055/1‑67 (MQ=255)                                                                                                                                           cccAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATcag     >  3:116640/1‑148 (MQ=255)                                                                                                                                             cAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATcagcag  <  4:122243/149‑1 (MQ=255)                                                                                                                                                    GCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATc       >  7:12885‑M1/1‑137 (MQ=255)                                                                                                                                                    GCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATc       <  8:12885‑M1/137‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                              CCAGCAGCAGCCACAGGCCAATACCGATCAGCGCTGCGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATCAGCAG  >  NC_002947/724150‑724438

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.