New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	724297 =	47 (0.890)	6 (0.120)	4/248	NT	12.9%	coding (334/861 nt)	PP_0618	branched‑chain amino acid ABC transporter permease
	?	NC_002947	724330 =	35 (0.680)					coding (301/861 nt)	PP_0618	branched‑chain amino acid ABC transporter permease

GCGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATCAGCAGCGCCAGCCAGAAGTTGCCGGTGACGGCCACGGCGGTGTAG  >  NC_002947/724185‑724478                                                                                                                                                  |                                                                                                                                                     gcgctgctgattgcgccactggtggtggccgcgctggcctgggcggtcgagcgcctgttgatcaaacgcatctaccacctgccgcacaccttccagatcctcgtcaccctcgGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGa                                                                                                                                                    >  7:192673‑M1/113‑148 (MQ=255) gcgctgctgattgcgccactggtggtggccgcgctggcctgggcggtcgagcgcctgttgatcaaacgcatctaccacctgccgcacaccttccagatcctcgtcaccctcgGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGa                                                                                                                                                    >  4:251596‑M1/113‑148 (MQ=255) gcgctgctgattgcgccactggtggtggccgcgctggcctgggcggtcgagcgcctgttgatcaaacgcatctaccacctgccgcacaccttccagatcctcgtcaccctcgGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGa                                                                                                                                                    >  2:190832‑M1/113‑148 (MQ=255)  cGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCTCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAg                                                                                                                                                   <  3:244367/148‑1 (MQ=255)  cGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAgg                                                                                                                                                  <  8:121000/149‑1 (MQ=255)  cGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAgg                                                                                                                                                  <  4:273582/149‑1 (MQ=255)  cGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAgg                                                                                                                                                  <  4:181514/149‑1 (MQ=255)         gATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGAc                                                                                                                                             >  3:190170/1‑147 (MQ=255)         gATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGa                                                                                                                                           <  3:84518/149‑1 (MQ=255)          attgcgccactggtggtggccgcgctggcctgggcggtcgagcgcctgttgatcaaacgcatctaccacctgccgcacaccttccagatcctcgtcaccctcgGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAgg                                                                                                                                                  >  1:178619‑M1/104‑141 (MQ=255)          attgcgccactggtggtggccgcgctggcctgggcggtcgagcgcctgttgatcaaacgcatctaccacctgccgcacaccttccagatcctcgtcaccctcgGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAgg                                                                                                                                                  <  2:178619‑M1/38‑1 (MQ=255)                        gtagtaGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGgtgt                                                                                                                            >  8:309979/1‑149 (MQ=255)                        gtagtaGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGgtgt                                                                                                                            >  7:27256/1‑149 (MQ=255)                        gtagtaGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGgtgt                                                                                                                            <  5:69905/149‑1 (MQ=255)                                    gATGAAGTTGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGa                                                                                                                                           <  2:201690/122‑1 (MQ=255)                                    gATGAAGTAGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGa                                                                                                                                           >  1:201690/1‑122 (MQ=255)                                          gTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGc                                                                                                          <  8:27256/149‑1 (MQ=255)                                                 aGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGAt                                                                                                   >  7:63619/1‑149 (MQ=255)                                                        gCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAg                                                                                                                     <  3:257205/124‑1 (MQ=255)                                                        gCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAg                                                                                                                     >  4:257205/1‑124 (MQ=255)                                                        gCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAgg                                                                                            >  4:143000/1‑149 (MQ=255)                                                              cgcgCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTc                                                                                       >  5:137707/1‑148 (MQ=255)                                                               gcgcAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGa                                                                                     >  5:27034/1‑149 (MQ=255)                                                                 gcAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGAcc                                                                                   <  7:309979/149‑1 (MQ=255)                                                                   aGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGGACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAgg                                                                                            <  7:185068/138‑1 (MQ=255)                                                                   aGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGCGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAgg                                                                                            >  8:185068/1‑138 (MQ=255)                                                                     ttCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGccc                                                                               <  6:137707/149‑1 (MQ=255)                                                                             gCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAggtggt                                                                                                                >  2:220587/1‑108 (MQ=255)                                                                             gCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAggtggt                                                                                                                <  1:220587/108‑1 (MQ=255)                                                                                  gCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGgc                                                                                           <  8:158266/124‑1 (MQ=255)                                                                                  gCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGgc                                                                                           >  7:158266/1‑124 (MQ=255)                                                                                    aaTGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGAt                                                                                                   <  6:14503/114‑1 (MQ=255)                                                                                    aaTGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGAt                                                                                                   >  5:14503/1‑114 (MQ=255)                                                                                            tGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAg                                                         <  1:153249/148‑1 (MQ=255)                                                                                              cccACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTgg                                                      >  4:64018/1‑149 (MQ=255)                                                                                               ccACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGgc                                                     <  8:63619/149‑1 (MQ=255)                                                                                                   cGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTgg                                                                                                                                   <  6:79055/67‑1 (MQ=255)                                                                                                   cGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTgg                                                                                                                                   >  5:79055/1‑67 (MQ=255)                                                                                                        cccAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATcag                                             >  3:116640/1‑148 (MQ=255)                                                                                                          cAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATcagcag                                          <  4:122243/149‑1 (MQ=255)                                                                                                            cctcggcatcgcgctgatcatccaggaagcgtcggtgcCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAAt                                                <  2:178619‑M2/103‑1 (MQ=255)                                                                                                            cctcggcatcgcgctgatcatccaggaagcgtcggtgcCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAAt                                                >  1:178619‑M2/39‑141 (MQ=255)                                                                                                              tcggcatcgcgctgatcatccaggaagcgtcggtgcCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATCAGCAgcgc                                       >  2:190832‑M2/37‑148 (MQ=255)                                                                                                              tcggcatcgcgctgatcatccaggaagcgtcggtgcCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATCAGCAgcgc                                       >  7:192673‑M2/37‑148 (MQ=255)                                                                                                              tcggcatcgcgctgatcatccaggaagcgtcggtgcCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATCAGCAgcgc                                       >  4:251596‑M2/37‑148 (MQ=255)                                                                                                                 GCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATc                                               >  7:12885‑M1/1‑137 (MQ=255)                                                                                                                 GCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATc                                               <  8:12885‑M1/137‑1 (MQ=255)                                                                                                                   ACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATCAGCAGCgcc                                      <  3:182748‑M1/144‑1 (MQ=255)                                                                                                                   ACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATCAGCAGCgcc                                      >  4:182748‑M1/1‑144 (MQ=255)                                                                                                                                 gatgatCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATCAGCAGCGCCAGCCAGAAGTTGCCGGTg                    <  4:116640/148‑1 (MQ=255)                                                                                                                                   tgatCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATCAGCAGCGCCAGCCAGAAGTTGCCGGTGACg                 <  3:64018/149‑1 (MQ=255)                                                                                                                                      tCATCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGGGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATCAGCAGCGCCAGCCAGaa                              <  2:62885/133‑1 (MQ=255)                                                                                                                                      tCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTATGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACAGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATCAGCAGCGCCAGCCAGaa                              >  1:62885/1‑133 (MQ=255)                                                                                                                                      aagcgtcggtgcCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATCAGCAGCGCCAGCCAGAAGTTGCCGGTGACGGc               <  1:190832‑M2/136‑1 (MQ=255)                                                                                                                                                  cGAGGGTGACGAGGATCTGGAAGGTGGGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATCAGCAGCGCCAGCCAGAAGTTGCCGGGGACGGCCACGGCGGTGTAg  <  3:344745/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                     GCGAAGCCGATCAGGAACAAGCGGTAGTAGGGGTAGATGAAGTCGCCGAGTATCAGCACCCCGCGCAGTTCGGGTGGCACGGCAATGTTTTTGCCCACCGGGCCCCAGATCAGCACCGACGCTTCCTGGATGATCAGCGCGATGCCGAGGGTGACGAGGATCTGGAAGGTGTGCGGCAGGTGGTAGATGCGTTTGATCAACAGGCGCTCGACCGCCCAGGCCAGCGCGGCCACCACCAGTGGCGCAATCAGCAGCGCCAGCCAGAAGTTGCCGGTGACGGCCACGGCGGTGTAG  >  NC_002947/724185‑724478

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.