New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	953577 =	47 (0.890)	3 (0.060)	3/244	NT	6.2%	coding (386/624 nt)	cyoC	cytochrome bo terminal oxidase subunit III
	?	NC_002947	953626 =	45 (0.890)					coding (435/624 nt)	cyoC	cytochrome bo terminal oxidase subunit III

TGCGGGTCTTGGCGGTCGGCGTGATGCCGTGCTTGTTGATCTGGTACATCATGATTGCCATCCAGATCAGACCAGCAGTCACGTGCAGACCGTGGGTACCTACCAGGGCGAAGAAGCCCGACAGGAAGCCACTGCGCTGCGGGCCGAAGCCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/953729‑953577 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccctGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGCCAAGACCCGCATGAGCTGCCTGAGCCTGTTCTGGCACTTCCTGGACGTGGTC  >  NC_002947/953626‑953770                                                                                                                                                                                                                                                                                                            TGCGGGTCTTGGCGGTCGGCGTGATGCCGTGCTTGTTGATCTGGTACATCATGATTGCCATCCAGATCAGACCAGCAGTCACGTGCAGACCGTGGGTACCTACCAGGGCGAAGAAGCCCGACAGGAAGCCACTGCGCTGCGGGCCGAAG                                                                                                                                                       <  7:166044/149‑1    GGGTCTTGGCGGTCGGCTTGATGCCGTGCTTGTTGATCTGGTACATCATGATTGCCATCCAGATCAGACCAGCAGTCACGTGCAGACCGTGGGTACCTACCAGGGCGAAGAAGCCCGACAGGAAGCCACTGCGCTGCGGGCCGAAGCCC                                                                                                                                                    <  4:24220/149‑1                               GCTTGTTGATCTGGTACATCATGATTGCCATCCAGATCAGACCAGCAGTCACGTGCAGACCGTGGGTACCTACCAGGGCGAAGAAGCCCGACAGGAAGCCACTGCGCTGCGGGCCGAAGCCC                                                                                                                                                    <  4:86549/122‑1                                                                                                     TACCAGGGCGAAGAAGCCCGACAGGAAGCCACTGCGCTGCGGGCCGAAGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGAT                                                                                          <  1:34418/110‑1                                                                                                     TACCAGGGCGAAGAAGCCCGACAGGAAGCCACTGCGCTGCGGGCCGAAGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGAT                                                                                          >  2:34418/1‑110                                                                                                       CCAGGGCGAAGAAGCCCGACAGGAAGCCACTGCGCTGCGGGCCGAAGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGCCAAGA                                                 >  5:128786/1‑149                                                                                                                                                     GCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGCAAAGACCCGCATGAGCTGCCTGAGCCTGTTCTGGCACTTCCTGGACGTGGT   <  8:282267/149‑1                                                                                                                                                     GCCCTGGTAGGTACACACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGCCAACACCCGCATGAGCTGCCTGCGCCTGTTCTGGCAATTCCTGGACtttgt   >  8:317330/1‑144                                                                                                                                                      CCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGCCAAGACCCGCATGAGCTGCCTGAGCCTGTTCTGGCACTTCCTGGACGTGGTC  <  8:184451/149‑1                                                                                                                                                                                                                                                                                                            TGCGGGTCTTGGCGGTCGGCGTGATGCCGTGCTTGTTGATCTGGTACATCATGATTGCCATCCAGATCAGACCAGCAGTCACGTGCAGACCGTGGGTACCTACCAGGGCGAAGAAGCCCGACAGGAAGCCACTGCGCTGCGGGCCGAAGCCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/953729‑953577 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccctGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGCCAAGACCCGCATGAGCTGCCTGAGCCTGTTCTGGCACTTCCTGGACGTGGTC  >  NC_002947/953626‑953770

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.