New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	953577 =	47 (0.890)	3 (0.060)	3/244	NT	6.2%	coding (386/624 nt)	cyoC	cytochrome bo terminal oxidase subunit III
	?	NC_002947	953626 =	45 (0.890)					coding (435/624 nt)	cyoC	cytochrome bo terminal oxidase subunit III

CAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGCCAAGACCCGCATGAGCTGCCTGAGCCTGTTCTGGCACTTCCTGGACGTGGTC  >  NC_002947/953479‑953770                                                                                                                                                    |                                                                                                                                                 tcttggcggtcggcgtgatgccgtgcttgttgatctggtacatcatgattgccatccagatcagaccagcagtcacgtgcagaccgtgggtacctaccAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTgg                                                                                                                                                 >  5:128786‑M1/99‑149 (MQ=255) cAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTgg                                                                                                                                                 <  3:255254/149‑1 (MQ=255) cAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTgg                                                                                                                                                 <  6:282433/149‑1 (MQ=255)                aCTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGt                                                                                                                                   >  2:33415/1‑148 (MQ=255)                aCTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGt                                                                                                                                   <  1:33415/148‑1 (MQ=255)                         gTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCAc                                                                                                                             >  5:186340/1‑145 (MQ=255)                         gTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCAc                                                                                                                             <  6:186340/145‑1 (MQ=255)                             gCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGActgc                                                                                                                     <  3:277434/149‑1 (MQ=255)                               tgtgACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGActgctg                                                                                                                   >  1:229643/1‑149 (MQ=255)                                 tgACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTgg                                                                                                                  <  5:362723/148‑1 (MQ=255)                                         cTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTACCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCTGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTg                                                                                                         <  5:247422/149‑1 (MQ=255)                                          atcatgattgccatccagatcagaccagcagtcacgtgcagaccgtgggtacctaccAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTggta                                                                                                                                               <  1:34418‑M1/53‑1 (MQ=255)                                          atcatgattgccatccagatcagaccagcagtcacgtgcagaccgtgggtacctaccAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTggta                                                                                                                                               >  2:34418‑M1/58‑110 (MQ=255)                                            ttCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTg                                                                                                              >  3:202244/1‑141 (MQ=255)                                            ttCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTg                                                                                                              <  4:202244/141‑1 (MQ=255)                                               ggTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATgg                                                                                                    >  7:59826/1‑148 (MQ=255)                                                 tGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCaa                                                                                                 >  6:269773/1‑149 (MQ=255)                                                 tGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCAGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCaa                                                                                                 >  6:240050/1‑149 (MQ=255)                                                     ggCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCat                                                                                             <  5:269773/149‑1 (MQ=255)                                                      gCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCt                                                                                                                                 <  7:311100/112‑1 (MQ=255)                                                      gCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCt                                                                                                                                 >  8:311100/1‑112 (MQ=255)                                                       cTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCatga                                                                                           <  1:263453/149‑1 (MQ=255)                                                       cTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCatga                                                                                           <  5:246451/149‑1 (MQ=255)                                                            tCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTAc                                                                                      <  2:229643/149‑1 (MQ=255)                                                               cgATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAg                                                                                   <  5:240050/149‑1 (MQ=255)                                                                   ggAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCTGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGAt                                                                                                      <  3:336899/126‑1 (MQ=255)                                                                   ggAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGAt                                                                                                      >  4:336899/1‑126 (MQ=255)                                                                                   cATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCAc                                                               >  2:265104/1‑149 (MQ=255)                                                                                    aTCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCatgat                                                                                          <  4:341856/121‑1 (MQ=255)                                                                                    aTCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCatgat                                                                                          >  3:341856/1‑121 (MQ=255)                                                                                            aTCAGCGAGGGATTCGGCCCGCAGCGCAGTGGCTTCCTGTAGGGCTTATTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATGTGGATGGAAATCATGATGTACCAGCTCATCAAGCACGGCATCACGCAGACCGc                                                      >  6:349490/1‑149 (MQ=255)                                                                                               taccagggcgaagaagcccgacaggaagccactgcgctgcgggccgaagccctGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCatgat                                                                                          >  2:34418‑M2/54‑110 (MQ=255)                                                                                               taccagggcgaagaagcccgacaggaagccactgcgctgcgggccgaagccctGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCatgat                                                                                          <  1:34418‑M2/57‑1 (MQ=255)                                                                                               aGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGCCaa                                                   <  1:265104/149‑1 (MQ=255)                                                                                                 ccagggcgaagaagcccgacaggaagccactgcgctgcgggccgaagccctGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGCCAAGa                                                 >  5:128786‑M2/52‑149 (MQ=255)                                                                                                 cGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGAt                                                                                                      <  4:157485/96‑1 (MQ=255)                                                                                                    GGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGc                                                                         <  4:86549‑M1/122‑1 (MQ=255)                                                                                                    GGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCAAGCCGACCGCCAAGAccc                                              <  4:24220‑M1/149‑1 (MQ=255)                                                                                                       CTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGCCAAGACCCGCa                                           <  7:166044‑M1/149‑1 (MQ=255)                                                                                                        ttCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGCCAAGACCCGCAt                                          >  5:215372/1‑149 (MQ=255)                                                                                                           ggCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTTGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGCCAAGACCCGCATGa                                        <  7:240938/148‑1 (MQ=255)                                                                                                           ggCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAAAAATCACGGCATAACGCCGACCGACAAGACCCTCAt                                          >  8:240938/1‑146 (MQ=255)                                                                                                            gCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCt                                                                                                          <  2:156583/81‑1 (MQ=255)                                                                                                            gCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCt                                                                                                          >  1:156583/1‑81 (MQ=255)                                                                                                                   gcgcagTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGCCAAGACCCGCATGAGCTGCCTGa                               <  6:215372/149‑1 (MQ=255)                                                                                                                    cgcagTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGCCAAGACCCGCATGAGCTGCCTGAg                              <  1:67481/149‑1 (MQ=255)                                                                                                                     gcagTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGCCAAGACCCGCATGAGCTGCCTGAGc                             <  8:166044/149‑1 (MQ=255)                                                                                                                       agTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGcc                                                     >  1:186622/1‑123 (MQ=255)                                                                                                                       agTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGcc                                                     <  2:186622/123‑1 (MQ=255)                                                                                                                           gCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACAAGATCAACAAGCACGGCATCACGCCGACCGCCAAGACCCGCATGAGCTGCCTGAGCCTGTTc                       >  7:184451/1‑149 (MQ=255)                                                                                                                               ccTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGCCAAGACCCGCATGAGCTGc                                   >  6:304425/1‑133 (MQ=255)                                                                                                                               ccTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGCCAAGACCCGCATGAGCTGc                                   <  5:304425/133‑1 (MQ=255)                                                                                                                                 tGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGCCAAGACCCGCATGAGCTGCCTGAGCCTGTTCTGGCAc                 >  1:4920/1‑149 (MQ=255)                                                                                                                                  gTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGCCAAGACCCGCATGAGCTGCCTGAGc                             >  2:266831/1‑136 (MQ=255)                                                                                                                                  gTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGCCAAGACCCGCATGAGCTGCCTGAGc                             <  1:266831/136‑1 (MQ=255)                                                                                                                                         ttcttcGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGCAAAGACCCGCATGAGCTGCCTGAGCCTGTTCTGGCACTTCCTGGa         >  7:282267/1‑149 (MQ=255)                                                                                                                                             tcGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGCCAAGACCCGCATGAGCTGCCTGAGCCTGTTCTGGCACTTCCt            >  7:38672/1‑142 (MQ=255)                                                                                                                                             tcGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGCCAAGACCCGCATGAGCTGCCTGAGCCTGTTCTGGCACTTCCt            <  8:38672/142‑1 (MQ=255)                                                                                                                                               gccctGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGCAAAGACCCGCATGAGCTGCCTGAGCCTGTTCTGGCACTTCCTGGACGTGGt   <  8:282267‑M2/144‑1 (MQ=255)                                                                                                                                               gccctGGTAGGTACACACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGCCAACACCCGCATGAGCTGCCTGCGCCTGTTCTGGCAATTCctggactttgt   >  8:317330‑M2/6‑144 (MQ=255)                                                                                                                                                ccctGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGCCAAGACCCGCATGAGCTGCCTGAGCCTGTTCTGGCACTTCCTGGACGTGGTc  <  8:184451‑M2/145‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                 CAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGCCAAGACCCGCATGAGCTGCCTGAGCCTGTTCTGGCACTTCCTGGACGTGGTC  >  NC_002947/953479‑953770

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.