New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 953577 = | 47 (0.890) | 3 (0.060) | 3/244 | NT | 6.2% | coding (386/624 nt) | cyoC | cytochrome bo terminal oxidase subunit III |
? | NC_002947 | 953626 = | 45 (0.890) | coding (435/624 nt) | cyoC | cytochrome bo terminal oxidase subunit III |
CTGTCCTCGATCACCTTCGGCTTCGCCATGCTGAAGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGCCAA > NC_002947/953432‑953721 | gaccacgtccaggaagtgccagaacaggctcaggcagctcatgcgggtcttggcggtcggcgtgatgccgtgcttgttgatctggtacatcatgattgccatccagatcagaccagcagtcacgtgcagaccgtgggtacctaccAggg < 8:184451‑M1/4‑1 (MQ=255) accacgtccaggaagtgccagaacaggctcaggcagctcatgcgggtctttgcggtcggcgtgatgccgtgcttgttgatctggtacatcatgattgccatccagatcagaccagcagtcacgtgcagaccgtgggtacctaccAGGGc < 8:282267‑M1/5‑1 (MQ=255) acaaagtccaggaattgccagaacaggcgcaggcagctcatgcgggtgttggcggtcggcgtgatgccgtgcttgttgatctggtacatcatgattgccatccagatcagaccagcagtcacgtgcagaccgtgtgtacctaccAGGGc > 8:317330‑M1/145‑149 (MQ=255) tCCTCGATCACCTTCGGCTTCGCCATGCTGAAGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCtt > 5:282433/1‑149 (MQ=255) gATCACCTTCGGCTTCGCCATGCTGAAGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGcc > 5:161879/1‑149 (MQ=255) aTGCTGAAGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCt < 8:107909/149‑1 (MQ=255) aTGCTGAAGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCt < 2:329786/149‑1 (MQ=255) cTGAAGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTc < 6:161879/149‑1 (MQ=255) aGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGc < 3:265515/149‑1 (MQ=255) gTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGattct > 6:246451/1‑149 (MQ=255) gTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACATGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGcttct > 2:263453/1‑149 (MQ=255) gATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTc < 5:266420/132‑1 (MQ=255) gATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTc > 6:266420/1‑132 (MQ=255) gATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGc > 4:277434/1‑149 (MQ=255) aTGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGATGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGcc > 6:362723/1‑149 (MQ=255) tcttggcggtcggcgtgatgccgtgcttgttgatctggtacatcatgattgccatccagatcagaccagcagtcacgtgcagaccgtgggtacctaccAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTgg > 5:128786‑M1/99‑149 (MQ=255) cAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTgg < 3:255254/149‑1 (MQ=255) cAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTgg < 6:282433/149‑1 (MQ=255) aaGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGccc > 6:173247/1‑145 (MQ=255) aaGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGccc < 5:173247/145‑1 (MQ=255) tACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGt < 6:261474/107‑1 (MQ=255) aCTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGt > 2:33415/1‑148 (MQ=255) aCTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGt < 1:33415/148‑1 (MQ=255) gTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCAc < 6:186340/145‑1 (MQ=255) gTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCAc > 5:186340/1‑145 (MQ=255) gCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGActgc < 3:277434/149‑1 (MQ=255) tgtgACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGActgctg > 1:229643/1‑149 (MQ=255) tgACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTgg < 5:362723/148‑1 (MQ=255) aCCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCgg > 5:191102/1‑100 (MQ=255) aCCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCgg < 6:191102/100‑1 (MQ=255) cTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTACCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCTGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTg < 5:247422/149‑1 (MQ=255) atcatgattgccatccagatcagaccagcagtcacgtgcagaccgtgggtacctaccAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTggta < 1:34418‑M1/53‑1 (MQ=255) atcatgattgccatccagatcagaccagcagtcacgtgcagaccgtgggtacctaccAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTggta > 2:34418‑M1/58‑110 (MQ=255) ttCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTg < 4:202244/141‑1 (MQ=255) ttCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTg > 3:202244/1‑141 (MQ=255) ggTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATgg > 7:59826/1‑148 (MQ=255) gTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGt > 2:59218/1‑74 (MQ=255) tGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCaa > 6:269773/1‑149 (MQ=255) tGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCAGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCaa > 6:240050/1‑149 (MQ=255) ggCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCat < 5:269773/149‑1 (MQ=255) gCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCt < 7:311100/112‑1 (MQ=255) gCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCt > 8:311100/1‑112 (MQ=255) cTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCatga < 1:263453/149‑1 (MQ=255) cTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCatga < 5:246451/149‑1 (MQ=255) tCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTAc < 2:229643/149‑1 (MQ=255) cgATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAg < 5:240050/149‑1 (MQ=255) ggAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCTGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGAt < 3:336899/126‑1 (MQ=255) ggAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGAt > 4:336899/1‑126 (MQ=255) aaaTCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGcttc < 2:49373/71‑1 (MQ=255) cATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCAc > 2:265104/1‑149 (MQ=255) aTCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCatgat > 3:341856/1‑121 (MQ=255) aTCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCatgat < 4:341856/121‑1 (MQ=255) aTCAGCGAGGGATTCGGCCCGCAGCGCAGTGGCTTCCTGTAGGGCTTATTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATGTGGATGGAAATCATGATGTACCAGCTCATCAAGCACGGCATCACGCAGACCGc > 6:349490/1‑149 (MQ=255) aGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGCCaa < 1:265104/149‑1 (MQ=255) cGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGAt < 4:157485/96‑1 (MQ=255) | CTGTCCTCGATCACCTTCGGCTTCGCCATGCTGAAGATGTTCGATGGCAAGAAAGCAGGTGTACTGGGCTGGTTGGCTGTGACCTTCCTGTTCGGTGCAGGCTTCATCGCGATGGAAATCTATGAGTTCCATCACCTGATCAGCGAGGGCTTCGGCCCGCAGCGCAGTGGCTTCCTGTCGGGCTTCTTCGCCCTGGTAGGTACCCACGGTCTGCACGTGACTGCTGGTCTGATCTGGATGGCAATCATGATGTACCAGATCAACAAGCACGGCATCACGCCGACCGCCAA > NC_002947/953432‑953721 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |