New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1347195 =	45 (0.850)	3 (0.070)	3/218	NT	7.4%	intergenic (‑303/+101)	udh/galP‑I	uronate dehydrogenase/porin‑like protein
	?	NC_002947	1347287 =	37 (0.820)					intergenic (‑395/+9)	udh/galP‑I	uronate dehydrogenase/porin‑like protein

CAGCAATAACGAGTTCGATGAGAACCGGTTGATCTTCAACTATCCGCTGTCGTTGCTCTGATCAAGATCTGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGGCGAACGGCGGGTGAAAACTGGCCAGCAGGGCCGGCCCATTCGCGGGTAAACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1347356‑1347195 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attcgcgggtaaacccgcAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTGCTGTAATCCCGGCGAATCGACGAGTTACGCCATTTCACGCTTAAATCCTTGAACGCCCCGCTCTGGATCACA  >  NC_002947/1347287‑1347425                                                                                                                                                                                                                                                                                                               CAGCAATAACGAGTTCGATGAGAACCGGTTGATCTTCAACTATCCGCTGTCGTTGCTCTGATCAAGATCTGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGGCGAACGGCGGGTGAAAACTGGCCAGCAGGGCCGGCCCATTCG                                                                                                                                                          >  5:254513/1‑149    CAATAACGAGTTCGATGAGAACCGGTTGATCTTCAACTATCCGCTGTCGTTGCTCTGATCAAGATCTGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGGCGAACGGCGGGTGAAAACTGGCCAGCAGGGCCGGCCCATTCGCGG                                                                                                                                                       >  6:79762/1‑149          CGAGTTCGATGAGAACCGGTTGATCTTCAACTATCCGCTGTCGTTGCTCTGATCAAGATCTGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGGCGAACGGCGGGTGAAAACTGGCCAGCAGGGCCGGCCCATTCGCGGGTAAAC                                                                                                                                                 <  7:254187/149‑1                   TGAGAACCGGTTGATCTTCAACTATCCGCTGTCGTTGCTCTGATCAAGATCTGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGGCGAACGGCGGGTGAAAACTGGCCAGCAGGGCCGGCCCATTCGCGG                                                                                                                                                       <  7:137208/134‑1                   TGAGAACCGGTTGATCTTCAACTATCCGCTGTCGTTGCTCTGATCAAGATCTGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGGCGAACGGCGGGTGAAAACTGGCCAGCAGGGCCGGCCCATTCGCGG                                                                                                                                                       >  8:137208/1‑134                                                                           GTTTACCCGCGAATACGGTGGTGGCGGCAACGGCGAACGGCGGGTGAAAACTGGCCAGCAGGGCCGGCCCATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCG                                                                                >  7:166579/1‑149                                                                                 CCGCGAATACGGTGGTGGCGGCAACGGCGAACGGCGGGTGAAAACTGGCCAGCAGGGCCGGCCCATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTG                                                                          >  8:49024/1‑149                                                                                                        ACGGCGAACGGCGGGTGAAAACTGGCCAGCAGGGCCGGCCCATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTGCTGTAATCCCGGCGAATCGACGA                                                   <  8:166579/149‑1                                                                                                                                                    CGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTGCTGTAATCCCGCCGAATCGACGAGTTACGCCATTTCAC                                    >  2:173622/1‑120                                                                                                                                                      CGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTGCTGTAATCCCGGCGAATCGACGAGTTACGCCATTTCACGC                                  <  3:235151/120‑1                                                                                                                                                      CGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTGCTGTAATCCCGGCGAATCGACGAGTTACGCCATTTCACGC                                  >  4:235151/1‑120                                                                                                                                                         GTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTGCTGTAATCCCGGCGAATCGACGAGTTACGCCATTTCACGCTTAAATCCTTGAACGCCCCGCTCTGGATCACA  <  6:101722/149‑1                                                                                                                                                                                                                                                                                                               CAGCAATAACGAGTTCGATGAGAACCGGTTGATCTTCAACTATCCGCTGTCGTTGCTCTGATCAAGATCTGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGGCGAACGGCGGGTGAAAACTGGCCAGCAGGGCCGGCCCATTCGCGGGTAAACCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1347356‑1347195 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attcgcgggtaaacccgcAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTGCTGTAATCCCGGCGAATCGACGAGTTACGCCATTTCACGCTTAAATCCTTGAACGCCCCGCTCTGGATCACA  >  NC_002947/1347287‑1347425

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.