New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1347195 =	45 (0.850)	3 (0.070)	3/218	NT	7.4%	intergenic (‑303/+101)	udh/galP‑I	uronate dehydrogenase/porin‑like protein
	?	NC_002947	1347287 =	37 (0.820)					intergenic (‑395/+9)	udh/galP‑I	uronate dehydrogenase/porin‑like protein

ACCTGATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTGCTGTAATCCCGGCGAATCGACGAGTTACGCCATTTCACGCTTAAATCCTTGAACGCCCCGCTCTGGATCACA  >  NC_002947/1347141‑1347425                                                                                                                                                   |                                                                                                                                           acCTGATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAgc                                                                                                                                          >  8:49945/1‑148 (MQ=255)   cTGATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATc                                                                                                                                        >  6:254513/1‑149 (MQ=255)     gATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCGTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCtt                                                                                                                                      >  1:109964/1‑149 (MQ=255)          aTGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCa                                                                                                                                 <  2:19086/149‑1 (MQ=255)             gtggACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCagag                                                                                                                              >  4:237736/1‑149 (MQ=255)                     acaTCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGa                                                                                                                        >  8:61936/1‑147 (MQ=255)                     acaTCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGACCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATc                                                                                                                                  >  5:77302/1‑137 (MQ=255)                     acaTCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGACCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATc                                                                                                                                  <  6:77302/137‑1 (MQ=255)                       aTCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGc                                                                                                                    >  4:203008/1‑149 (MQ=255)                        tCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCg                                                                                                                   <  7:334795/149‑1 (MQ=255)                          ggAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGa                                                                                                                 >  5:103071/1‑149 (MQ=255)                           gAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTAGCGGGTAAACCCGCAGATCTTGATCagaa                                                                                                                              >  6:38423/1‑134 (MQ=255)                               ttGGGCGCAGGCCGCTGTGTAGGTGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGtt                                                                                                            <  2:109964/149‑1 (MQ=255)                                  ggCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCTGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGaa                                                                                                         <  7:49945/149‑1 (MQ=255)                                  ggCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGaa                                                                                                         <  6:103071/149‑1 (MQ=255)                                            gCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGtt                                                                                                            >  8:21199/1‑136 (MQ=255)                                            gCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGtt                                                                                                            <  7:21199/136‑1 (MQ=255)                                              tgtgTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGt                                                                                              >  6:211131/1‑148 (MQ=255)                                                tgtAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAAc                                                                                                                          >  8:35526/1‑118 (MQ=255)                                                tgtAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAAc                                                                                                                          <  7:35526/118‑1 (MQ=255)                                                  tAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCa                                                                                         <  3:237736/149‑1 (MQ=255)                                                    ggAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATc                                                                                       <  4:87118/149‑1 (MQ=255)                                                           gtttacccgcgaatacggtggtggcggcaacggcgaacggcgggtgaaaactggccagcagggccggcccattcgcgggtaaacccgcAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCg                                                                                >  7:166579‑M2/89‑149 (MQ=255)                                                           GTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCg                                                                                <  7:254187‑M1/149‑1 (MQ=255)                                                                 ccgcgaatacggtggtggcggcaacggcgaacggcgggtgaaaactggccagcagggccggcccattcgcgggtaaacccgcAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTg                                                                          >  8:49024‑M2/83‑149 (MQ=255)                                                                 CCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCa                                                                                         <  7:137208‑M1/134‑1 (MQ=255)                                                                 CCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCa                                                                                         >  8:137208‑M1/1‑134 (MQ=255)                                                                 CCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTg                                                                          >  6:79762‑M1/1‑149 (MQ=255)                                                                    CGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTGCTg                                                                       >  5:254513‑M1/1‑149 (MQ=255)                                                                            ccggccCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTGCTGTAATc                                                                  >  5:258449/1‑146 (MQ=255)                                                                            ccggccCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTGCTGTAATc                                                                  <  6:258449/146‑1 (MQ=255)                                                                                cccTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTGCTGTAATCCCGGCGa                                                           >  3:276226/1‑149 (MQ=255)                                                                                     ctgGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTGCTGTAATCCCGGCGAATcga                                                      >  3:73943/1‑149 (MQ=255)                                                                                        gCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTGCTGTAATCCCGGCGAATcgacga                                                   <  8:254187/149‑1 (MQ=255)                                                                                        acggcgaacggcgggtgaaaactggccagcagggccggcccattcgcgggtaaacccgcAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTGCTGTAATCCCGGCGAATcgacga                                                   <  8:166579‑M2/90‑1 (MQ=255)                                                                                             ttttCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTGCTGTAATCCCGGCGAATCGACGAGTTAc                                              >  6:20327/1‑149 (MQ=255)                                                                                                  aCCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTGCTGTAATCCCGGCGAATCGACGAGTTACGCCAt                                         >  5:101722/1‑149 (MQ=255)                                                                                                       ccgttcgccgttGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTGCTGTAATCCCGGCGAATCGACGAGTTACGCCATTTCAc                                    <  7:61936/149‑1 (MQ=255)                                                                                                       ccgttcgccgttGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTGCTGTAATCCCGGCGAATCGACGAGTTACGCCATTTCAc                                    <  5:20327/149‑1 (MQ=255)                                                                                                          ttcgccgttGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCGGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCTTTATTGCTGAAATCCCGGCGAATCGACGAGTTACGCCATTTCACGCt                                 >  1:121634/1‑149 (MQ=255)                                                                                                            cgccgttGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTGCTGTAATCCCGGCGAATCGACGAGTTACGCCATTTCACGCtt                                <  5:211131/148‑1 (MQ=255)                                                                                                             gccgttGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTGCTGTAATCCCGGCGAATCGACGAGTTACGCCATTTCACGCTTaa                              <  3:203008/149‑1 (MQ=255)                                                                                                                 ttGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTGCTGTAATCCCGGCGAATCGACGAGTTACGCCATTTCACGCTTAAATcc                          <  4:73943/149‑1 (MQ=255)                                                                                                                    ccgccACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCGGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCCTTATTGCTGCAATCCCGGCGAATCGACGAGTTACGCCATTTCACGCTTAAATCCtt                        <  2:121634/148‑1 (MQ=255)                                                                                                                     cgccACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTGCTGTAATCCCGGCGAAt                                                         <  3:81854/114‑1 (MQ=255)                                                                                                                     cgccACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTGCTGTAATCCCGGCGAAt                                                         >  4:81854/1‑114 (MQ=255)                                                                                                                           caccGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTGCTGTAATCCCGGCGAATCGACGAGTTACGCCATTTCACGCTTAAATCCTTGAACGccc                >  3:337829/1‑149 (MQ=255)                                                                                                                             ccGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGCCAGCGCATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTGCTGTAATCCCGGCGAAGCGACGAGTTACGCCAATTCACGCTTAAATCCTTGAACGCCCCg              >  2:88428/1‑149 (MQ=255)                                                                                                                                    cgcgggtaaacccgcAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTGCTGTAATCCCGCCGAATCGACGAGTTACGCCATTTCAc                                    >  2:173622‑M2/16‑120 (MQ=255)                                                                                                                                      cgggtaaacccgcAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTGCTGTAATCCCGGCGAATCGACGAGTTACGCCATTTCACGc                                  >  4:235151‑M2/14‑120 (MQ=255)                                                                                                                                      cgggtaaacccgcAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTGCTGTAATCCCGGCGAATCGACGAGTTACGCCATTTCACGc                                  <  3:235151‑M2/107‑1 (MQ=255)                                                                                                                                         gtaaacccgcAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTGCTGTAATCCCGGCGAATCGACGAGTTACGCCATTTCACGCTTAAATCCTTGAACGCCCCGCTCTGGATcaca  <  6:101722‑M2/139‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                           ACCTGATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATCGAACTCGTTATTGCTGTAATCCCGGCGAATCGACGAGTTACGCCATTTCACGCTTAAATCCTTGAACGCCCCGCTCTGGATCACA  >  NC_002947/1347141‑1347425

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.