New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1347195 =	45 (0.850)	3 (0.070)	3/218	NT	7.4%	intergenic (‑303/+101)	udh/galP‑I	uronate dehydrogenase/porin‑like protein
	?	NC_002947	1347287 =	37 (0.820)					intergenic (‑395/+9)	udh/galP‑I	uronate dehydrogenase/porin‑like protein

CCGCGAAAGGGCCAGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATC  >  NC_002947/1347053‑1347340                                                                                                                                               |                                                                                                                                                  ccGCGAAAGGGCCAGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTTAACCCGCTCCTACACCTGATCAATGGTGGAAACACATCGGAGGTTGGGCGCAGGCCGCGGTGTAGGAGCGGGtt                                                                                                                                             >  3:29642/1‑149 (MQ=255) ccGCGAAAGGGCCAGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGtt                                                                                                                                             <  2:87260/149‑1 (MQ=255)    tgtgatccagagcggggcgttcaaggatttaagcgtgaaatggcgtaactcgtcgattcgccgggattacagcaataacgagttcgatgagaaccggttgatcttcaactatccgctgtcgttgctctgatcaagatctGCGGGTTTAc                                                                                                                                          <  6:101722‑M1/10‑1 (MQ=255)        aGGGCCAGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCcgc                                                                                                                                      <  2:156809/149‑1 (MQ=255)                gCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGggc                                                                                                                              <  4:308248/149‑1 (MQ=255)                           aaTTTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCcgc                                                                                                                                      >  1:41011/1‑130 (MQ=255)                           aaTTTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCcgc                                                                                                                                      <  2:41011/130‑1 (MQ=255)                                    gcgtgaaatggcgtaactcgtcgattcgccgggattacagcaataacgagttcgatgagaaccggttgatcttcaactatccgctgtcgttgctctgatcaagatctGCGGGTTTACCcg                                                                                                                                       >  4:235151‑M1/108‑120 (MQ=255)                                    gcgtgaaatggcgtaactcgtcgattcgccgggattacagcaataacgagttcgatgagaaccggttgatcttcaactatccgctgtcgttgctctgatcaagatctGCGGGTTTACCcg                                                                                                                                       <  3:235151‑M1/13‑1 (MQ=255)                                     ccccgTTCACCGCCCCCGCCGCCACCGTATTCGCGTTTAAACCCTATCCTACACCTGACCAATGTTCGACACACATCGGAGCTTCGGCTTTGGCCGCTGGTTCGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTc                                                                                                         <  4:29642/147‑1 (MQ=21)                                      gtgaaatggcgtaactcgtcgattcggcgggattacagcaataacgagttcgatgagaaccggttgatcttcaactatccgctgtcgttgctctgatcaagatctGCGGGTTTACCcgcg                                                                                                                                     >  2:173622‑M1/106‑120 (MQ=255)                                          gctaCCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCAATGGTGGACACACATCGGAGGTGGGGCGCAGGCCGCTGTGTAGCAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACccg                                                                                                    <  3:201567/146‑1 (MQ=255)                                             aCCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGCTCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCGGGGTAGGAGCGGGGTTTCCCGCGAATGGGCCGGCCCGGGTGGCCAg                                                                                                              >  6:7563/1‑136 (MQ=21)                                              ccGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCGGATCAATGGTGGAAACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCGGCTGGGCAGTTTTAACccgcag                                                                                                 >  4:201567/1‑146 (MQ=21)                                                gtggccgccgccTCCTTATTCGCCGGTAAACCCGCTCCTACACCTGCTCAATCGTGTCCTCACATCCGACGTGGGCCGCATGCCTCGGCGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCcgccgttc                                                                                              <  3:75961/146‑1 (MQ=21)                                                gTTGCCGCCGCCACCTTTTTCGCTGGTAAAGCCGCTCCTAGACCTGATCTATGGTGCACTGACTTCTGAGGTTGGGCGCAGGCGTCTTTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCcgccgttc                                                                                              <  3:136418/149‑1 (MQ=21)                                                     tcgtcgattcgccgggattacagcaataacgagttcgatgagaaccggttgatcttcaactatccgctgtcgttgctctgatcaagatctGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCcgccgttcgccgt                                                                                         <  8:166579‑M1/59‑1 (MQ=255)                                                      gccgccACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGt                                                                                                                                              >  5:133136/1‑95 (MQ=255)                                                      gccgccACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGt                                                                                                                                              <  6:133136/95‑1 (MQ=255)                                                         gccACCGTATTCGCGGGTAATCCCGCTCCTACACCTGATCAATGGTGGACACCCATCGGAGGGTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTgcc                                                                                     >  3:87118/1‑149 (MQ=255)                                                            aCCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCAATGTTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTgccgc                                                                                   >  8:334795/1‑148 (MQ=255)                                                                         gTAAACCCGCTCCTACACCTGATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCctgctg                                                                                                                   <  8:194922/103‑1 (MQ=255)                                                                         gTAAACCCGCTCCTACACCTGATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCctgctg                                                                                                                   >  7:194922/1‑103 (MQ=255)                                                                           aaaCCCGCTCCTACACCTGATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTAccc                                                                                                                                        >  4:86431/1‑80 (MQ=255)                                                                           aaaCCCGCTCCTACACCTGATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTAccc                                                                                                                                        <  3:86431/80‑1 (MQ=255)                                                                            caataacgagttcgatgagaaccggttgatcttcaactatccgctgtcgttgctctgatcaagatctGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCgg                                                                  >  8:49024‑M1/68‑149 (MQ=255)                                                                                  cgagttcgatgagaaccggttgatcttcaactatccgctgtcgttgctctgatcaagatctGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAAc                                                            >  7:166579‑M1/62‑149 (MQ=255)                                                                                   tCCTACACCTGATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCgg                                                                                                                                                <  8:297818/64‑1 (MQ=255)                                                                                   tCCTACACCTGATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCgg                                                                                                                                                >  7:297818/1‑64 (MQ=255)                                                                                      tACACCTGATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCaccacc                                                                            <  2:347117/129‑1 (MQ=255)                                                                                      tACACCTGATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCaccacc                                                                            >  1:347117/1‑129 (MQ=255)                                                                                         acCTGATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCg                                                         >  1:19086/1‑145 (MQ=255)                                                                                         acCTGATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAgc                                                     >  8:49945/1‑148 (MQ=255)                                                                                           cTGATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATc                                                   >  6:254513/1‑149 (MQ=255)                                                                                             gATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCGTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCtt                                                 >  1:109964/1‑149 (MQ=255)                                                                                                  aTGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCa                                            <  2:19086/149‑1 (MQ=255)                                                                                                     gtggACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCagag                                         >  4:237736/1‑149 (MQ=255)                                                                                                             acaTCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGa                                   >  8:61936/1‑147 (MQ=255)                                                                                                             acaTCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGACCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATc                                             <  6:77302/137‑1 (MQ=255)                                                                                                             acaTCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGACCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATc                                             >  5:77302/1‑137 (MQ=255)                                                                                                               aTCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGc                               >  4:203008/1‑149 (MQ=255)                                                                                                                tCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCg                              <  7:334795/149‑1 (MQ=255)                                                                                                                  ggAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGa                            >  5:103071/1‑149 (MQ=255)                                                                                                                   gAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTAGCGGGTAAACCCGCAGATCTTGATCagaa                                         >  6:38423/1‑134 (MQ=255)                                                                                                                       ttGGGCGCAGGCCGCTGTGTAGGTGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGtt                       <  2:109964/149‑1 (MQ=255)                                                                                                                          ggCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCTGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGaa                    <  7:49945/149‑1 (MQ=255)                                                                                                                          ggCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGaa                    <  6:103071/149‑1 (MQ=255)                                                                                                                                 gCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCggg                                                                 >  2:315554/1‑97 (MQ=255)                                                                                                                                 gCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCggg                                                                 <  1:315554/97‑1 (MQ=255)                                                                                                                                    gCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGtt                       <  7:21199/136‑1 (MQ=255)                                                                                                                                    gCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGtt                       >  8:21199/1‑136 (MQ=255)                                                                                                                                      tgtgTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGt         >  6:211131/1‑148 (MQ=255)                                                                                                                                        tgtAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAAc                                     <  7:35526/118‑1 (MQ=255)                                                                                                                                        tgtAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAAc                                     >  8:35526/1‑118 (MQ=255)                                                                                                                                          tAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCa    <  3:237736/149‑1 (MQ=255)                                                                                                                                            ggAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATc  <  4:87118/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                  CCGCGAAAGGGCCAGGCCTGCTGGCCAATTTCCACCCGCCGTTCACCGTTGCCGCCGCCACCGTATTCGCGGGTAAACCCGCTCCTACACCTGATCAATGGTGGACACACATCGGAGGTTGGGCGCAGGCCGCTGTGTAGGAGCGGGTTTACCCGCGAATGGGCCGGCCCTGCTGGCCAGTTTTCACCCGCCGTTCGCCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCAGATCTTGATCAGAGCAACGACAGCGGATAGTTGAAGATCAACCGGTTCTCATC  >  NC_002947/1347053‑1347340

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.