| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1357142 | 36 (0.680) | 4 (0.080) | 4/242 | NT | 9.8% | coding (323/1608 nt) | PP_1182 | sensor histidine kinase |
| ? | NC_002947 | = 1357169 | 39 (0.780) | coding (350/1608 nt) | PP_1182 | sensor histidine kinase | |||||
CAGAATGAAACCCAACGCAAGCGTTCGCTGCTGATCTGGGAACGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1356991‑1357142‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcccACCTTGCGTAGCACTTGCGCCGCATGCGGGCCAATCTTCTCGACCACCACCAGGCCACGGTACAGGCGCGCCCGCTGGCCACCGTCAAGGCTGCGTGCGCTCATCGGCTGCAGCGCCAACTGCACGCCAAGCAGGCGTTCCCAGAT < NC_002947/1357169‑1357024 CAGAATGAAACCCAACGCAAGTGTTCGCTGCTGATCTGGGAACGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTG < 1:309947/148‑1CAGAATGAAACCCAACGCAAGCGTTCGCTGCTGATCTGGGAACGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTG < 5:318934/148‑1CAGAATGAAACCCAACGCAAGCGTTCGCTGCTGATCTGGGAACGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTAGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGG < 1:270964/149‑1 GAATGAAACCCAACGCAAGCGTTCGCTGCTGATCTGGGAACGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCC > 8:79535/1‑149 GAATGAAACCCAACGCAAGCGTTCGCTGCTGATCAGGGAACGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCCATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCCTGAAGATTGCCC > 5:154003/1‑149 GCTGATCTGGGAACGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCACCTTGCGTAGCACTTGCGCCGCATG > 1:308342/1‑149 GCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCACCTTGCGTAGCACTTGCGCCGCATGCGGGCC < 1:277628/141‑1 GCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGAACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCACCTTGCGTAGCACTTGCGCCGCATGCGGGCC > 2:277628/1‑141 CCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCACCTTGCGTAGCACTTGCGCCGCATGCGGGCCAATCTTCTC < 2:308342/149‑1 GCCCACCTTGCGTAGCACTTGCGCCGCATGCGGGCCAATCTTCTCGACCACCACCAGGCCACGGTACAGGCGCGCCCGCTGGCCACCGTCAAGGCTGCGTGCGCTCATCGGCTGCAGCGCCAACTGCACGCCAAGCAGGCGTTCC > 6:58833/1‑145 GCCCACCTTGCGTAGCACTTGCGCCGCATGCGGGCCAATCTTCTCGACCACCACCAGGCCACGGTACAGGCGCGCCCGCTGGCCACCGTCAAGGCTGCGTGCGCTCATCGGCTGCAGCGCCAACTGCACGCCAAGCAGGCGTTCC > 8:111265/1‑145 CCCACCTTGCGTAGCACTTGCGCCGCATGCGGGCCAATCTTCTCGACCACCACCAGGCCACGGTACAGGCGCGCCCGCTGGCCACCGTCAAGGCTGCGTGCGCTCATCGGCTGCAGCGCCAACTGCACGCCAAGCAGGCGTTCCCAGAT < 6:230554/149‑1 CCACCTTGCGTAGCACTTGCGCCGCATGCGGGCCAATCTTCTCGACCACCACCAGGCCACGGTACAGGCGCGCCCGCTGGCCACCGTCAAGGCTGCGTGCGCTCATCGGCTGCAGCGCCAACTGCACGCCAAGCAAGCGTTCgctgct > 4:317479/1‑142 CACCTTGCGTAGCACTTGCGCCGCATGCGGGCCAATCTTCTCGACCACCACCAGGCCACGGTACAGGCGCGCCCGCTGGCCACCGTCAAGGCTGCGTGCGCTCATCGGCTGCAGCGCCAACTGCACGCCAAGCAGGCGTTCCCAGAT > 4:265507/1‑147 CAGAATGAAACCCAACGCAAGCGTTCGCTGCTGATCTGGGAACGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1356991‑1357142‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcccACCTTGCGTAGCACTTGCGCCGCATGCGGGCCAATCTTCTCGACCACCACCAGGCCACGGTACAGGCGCGCCCGCTGGCCACCGTCAAGGCTGCGTGCGCTCATCGGCTGCAGCGCCAACTGCACGCCAAGCAGGCGTTCCCAGAT < NC_002947/1357169‑1357024 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |