New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1357142	36 (0.680)	4 (0.080)	4/242	NT	9.8%	coding (323/1608 nt)	PP_1182	sensor histidine kinase
	?	NC_002947	= 1357169	39 (0.780)					coding (350/1608 nt)	PP_1182	sensor histidine kinase

CTGATCTGGGAACGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGCCGAACAGCAGCAGCGTCTGGCACAGATCAAGCAGGAAA  >  NC_002947/1357021‑1357315                                                                                                                                                     |                                                                                                                                                   ctgATCTGGGAACGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGt                                                                                                                                                    <  3:243696/149‑1 (MQ=255)    agcagcgaacgctTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTgg                                                                                                                                                  >  4:317479‑M2/7‑146 (MQ=255)    aTCTGGGAACGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTggg                                                                                                                                                 <  6:230554‑M2/149‑4 (MQ=255)    aTCTGGGAACGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTg                                                                                                                                                   >  4:265507‑M2/1‑146 (MQ=255)        gcgAACGCTTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAg                                                                                                                                             <  4:197085/147‑1 (MQ=255)         ggAACGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTgggc                                                                                                                                                >  6:58833‑M2/1‑141 (MQ=255)         ggAACGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTgggc                                                                                                                                                >  8:111265‑M2/1‑141 (MQ=255)             cGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGa                                                                                                                                        <  4:318705/149‑1 (MQ=255)                      ggCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCt                                                                                                                               >  1:642/1‑149 (MQ=255)                        cGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAgg                                                                                                                                            <  5:74064/134‑1 (MQ=255)                        cGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAgg                                                                                                                                            >  6:74064/1‑134 (MQ=255)                               ttGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTcgcg                                                                                                                        >  8:284229/1‑147 (MQ=255)                                  gcgcTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTGCGCAAGGTGGGCCAGGAAGACCTGATGCTGGTcgc                                                                                                                         >  8:17294/1‑143 (MQ=255)                                  gcgcTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTGCGCAAGGTGGGCCAGGAAGACCTGATGCTGGTcgc                                                                                                                         <  7:17294/143‑1 (MQ=255)                                    gcTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTc                                                                                                                           >  6:113668/1‑139 (MQ=255)                                    gcTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTc                                                                                                                           <  5:113668/139‑1 (MQ=255)                                             gATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCa                                                                                                        <  5:230554/149‑1 (MQ=255)                                                 aGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGa                                                                                                    <  3:109516/149‑1 (MQ=255)                                                   cgcacgcaGCGTTGACGGTGGGCAGCGGGCGCGGCTGTACCGTGGCCTGGTGGTTGTCGAGAAGATTGGCCCGCATGCGGGGCAAGTGCTACGCAAGGTTGTCGAGGAAGACCTGATGCTGGTc                                                                                                                           <  4:154107/124‑1 (MQ=255)                                                   cgcacgcaGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTc                                                                                                                           >  3:154107/1‑124 (MQ=255)                                                              ttGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCaaa                                                                                                               >  6:134904/1‑125 (MQ=255)                                                              ttGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCaaa                                                                                                               <  5:134904/125‑1 (MQ=255)                                                              ttGACGGTGGCCAGCGGGCGCGCCTGTACCGGGTCCTGGTGGTGGTGGAGAAGATTGGCAAGCATGCGGCGCAAGTGCAACGCAAGGTGGGCCTGGAAGACGTGATGATGGTCGCGCAGAGCAAACAGAGCGGCTAGCTGGTGGGGCgg                                                                                       >  8:226653/1‑149 (MQ=255)                                                                    gTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTg                                                                                             >  8:61066/1‑137 (MQ=255)                                                                    gTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTg                                                                                             <  7:61066/137‑1 (MQ=255)                                                                     tGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCAccc                                                                                <  7:284229/149‑1 (MQ=255)                                                                          aGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCtcta                                                                            >  8:226720/1‑148 (MQ=255)                                                                                 gcgcCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTgg                                                                    <  4:255246/149‑1 (MQ=255)                                                                                       gTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCcgac                                                               >  1:319886/1‑148 (MQ=255)                                                                                           cGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAg                                                                                                   <  5:237530/108‑1 (MQ=255)                                                                                           cGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAg                                                                                                   >  6:237530/1‑108 (MQ=255)                                                                                               gCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTAACTATTGGCCGACGAATTGGt                                                       <  7:226720/148‑1 (MQ=255)                                                                                                      ggtggtCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTAcc                                               >  2:175062/1‑149 (MQ=255)                                                                                                       ttggtCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTAcc                                               <  8:78371/147‑1 (MQ=255)                                                                                                             gagaAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTgggccaatcttctcgaccaccaccaggccacggtacaggcgcgcccgctggccaccgtcaaggctgcgtgcgctcatcggctgcagcgccaactgcacgccaagcagg                                        <  2:308342‑M2/149‑109 (MQ=255)                                                                                                             gagaAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGc                                        >  5:229403/1‑149 (MQ=255)                                                                                                                      ggCCCGCATGCGGCGCAAGTGCTACGCAAGGTgggccaatcttctcgaccaccaccaggccacggttcaggcgcgcccgctggccaccgtcaaggctgcgtgcgctcatcggctgcagcgccaactgcacgccaagcaggc                                       >  2:277628‑M2/1‑32 (MQ=255)                                                                                                                      ggCCCGCATGCGGCGCAAGTGCTACGCAAGGTgggccaatcttctcgaccaccaccaggccacggtacaggcgcgcccgctggccaccgtcaaggctgcgtgcgctcatcggctgcagcgccaactgcacgccaagcaggc                                       <  1:277628‑M2/141‑110 (MQ=255)                                                                                                                         ccGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGCCGAAcagcag                              >  6:218621/1‑147 (MQ=255)                                                                                                                         ccGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGCCGAAcagcag                              >  4:177212/1‑147 (MQ=255)                                                                                                                          cGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGTCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGCCGAAcagc                                <  6:277272/144‑1 (MQ=255)                                                                                                                          cGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGTCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGCCGAAcagc                                >  5:277272/1‑144 (MQ=255)                                                                                                                            cATGCGGCGCAAGTGCTACGCAAGGTgggccaatcttctcgaccaccaccaggccacggtacaggcgcgcccgctggccaccgtcaaggctgcgtgcgctcatcggctgcagcgccaactgcacgccaagcaggcgttcccagatcagc                         >  1:308342‑M2/1‑26 (MQ=255)                                                                                                                               gcggcgCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGCCGAACAGCAGCAGCGTCt                      >  3:302229/1‑149 (MQ=255)                                                                                                                                        gTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGCCGAACAGCAGCAGCGTCTGGCACAGAt             <  4:302229/149‑1 (MQ=255)                                                                                                                                           cTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGCCGAACAGCAGCAGCGTCTGGCACAGATCaa          <  1:175062/149‑1 (MQ=255)                                                                                                                                            tACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGCCGAAcagcagca                            >  6:81005/1‑130 (MQ=255)                                                                                                                                            tACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGCCGAAcagcagca                            <  5:81005/130‑1 (MQ=255)                                                                                                                                            tACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGCCGAACAGCAGCAGCGTCTGGCACAGATCAAg         >  6:65918/1‑149 (MQ=255)                                                                                                                                              cGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGCCGAACAGCAGCAGCGTCTGGCACAGATCAAGc        <  2:319886/148‑1 (MQ=255)                                                                                                                                              cGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGCCGAACAGCAGCAGCGTCTGGCACAGATCAAGCa       <  5:218621/149‑1 (MQ=255)                                                                                                                                               gCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGCCGAACAGCAGCAGCGTCTGGCACAGATCAAGCAg      >  7:201282/1‑149 (MQ=255)                                                                                                                                                    gTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTATCCGGTAGCCGAACAGCAGCAGCGTCTGGCACAGATCAAGCAGGaaa  >  8:126303/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CTGATCTGGGAACGCCTGCTTGGCGTGCAGTTGGCGCTGCAGCCGATGAGCGCACGCAGCCTTGACGGTGGCCAGCGGGCGCGCCTGTACCGTGGCCTGGTGGTGGTCGAGAAGATTGGCCCGCATGCGGCGCAAGTGCTACGCAAGGTGGGCCAGGAAGACCTGATGCTGGTCGCGCAGATCAAACAGATCAGCGAGCAGTTGGCGCGGGCCACCCTCTATCTATTGGCCGACGAATTGGTGCGCTACCCGGTAGCCGAACAGCAGCAGCGTCTGGCACAGATCAAGCAGGAAA  >  NC_002947/1357021‑1357315

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.