New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1358263	57 (1.080)	5 (0.100)	5/244	NT	7.7%	coding (1444/1608 nt)	PP_1182	sensor histidine kinase
	?	NC_002947	= 1358320	65 (1.280)					coding (1501/1608 nt)	PP_1182	sensor histidine kinase

AACCTTGTCGGCAATGCCATGCGCCATGCCGAGGGCGAAGTGCGCCTGAGCTATCAGCTGGGCCAGCAACGTTGCCGTATCGATGTGGAGGATGACGGCCCGGGGATCCCCGAGGGCTTCTGGGACCGCATCTTCACGCCCTTCACCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1358113‑1358263 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccGTACGATCGACAAGCCCAACCCGTGCCCGCCCGAGGCACGGGTACGGCTGTCATCGAGGCGGGTGAAGGGCGTGAAGAT  <  NC_002947/1358320‑1358242                                                                                                                                                                                                                                        AACCTTGTCGGCAATGCCATGCGCCATGCCGAGGGCGAAGTGCGCCTGAGCTATCAGCTGGGCCAGCAACGTTGCCGTATCGATGTGGAGGATGACGGCCCGGGGATCCCCGAGGGCTTCTGGGACCGCATCTTCACGCCCTTCACCCG                                                                                   >  1:182816/1‑149    CTTGTCGGCAATGCCATGCGCCATGCCGAGGGCGAAGTGCGCCTGAGCTATCAGCTGGGCCAGCAACGTTGCCGTATCGATGTGGAGGATGACGGCCCGGGGATCCCCGAGGGCTTCTGGGACCGCATCTTCACGCCCTTCACCCGCCG                                                                                >  3:197329/1‑149                                                                    AACGTTGCCGTATCGATGTGGAGGATGACGGCCCGGGGATCCCCGAGGGCTTCTGGGACCGCATCTTCACGCCCTTCACCCGCCGTACGATCGACAAGCCCAACCCGTGCCCGCCCGAGGCACGGGTACGGCTGTCATCGAGGCGGGTG                <  4:197329/149‑1                                                                                                              CCGAGGGCTTCTGGGACCGCATCTTCACGCCCTTCACCCGCC‑T‑CGAT‑GAC‑AGCCCAACCCGTGCCCGCCCGAGGCACGGGTACGGCTGTCATCG                         >  7:98273/1‑94                                                                                                              CCGAGGGCTTCTGGGACCGCATCTTCACGCCCTTCACCCGCC‑T‑CGAT‑GAC‑AGCCCAACCCGTGCCCGCCCGAGGCACGGGTACGGCTGTCATCG                         <  8:98273/94‑1                                                                                                               CGAGGGCTTCTGGGACCGCATCTTCACGCCCTTCACCCGCCGTACGATCGACAAGCCCAACCCGTGCCCGCCCGAGGCACGGGTACGGCTGTCATCGAGGCGGGTGAAGGGCGTGAAGAT  <  3:145444/120‑1                                                                                                               CGAGGGCTTCTGGGACCGCATCTTCACGCCCTTCACCCGCCGTACGATCGACAAGCCCAACCCGTGCCCGCCCGAGGCACGGGTACGGCTGTCATCGAGGCGGGTGAAGGGCGTGAAGAT  >  4:145444/1‑120                                                                                                                                                                                                                                        AACCTTGTCGGCAATGCCATGCGCCATGCCGAGGGCGAAGTGCGCCTGAGCTATCAGCTGGGCCAGCAACGTTGCCGTATCGATGTGGAGGATGACGGCCCGGGGATCCCCGAGGGCTTCTGGGACCGCATCTTCACGCCCTTCACCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1358113‑1358263 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccGTACGATCGACAAGCCCAACCCGTGCCCGCCCGAGGCACGGGTACGGCTGTCATCGAGGCGGGTGAAGGGCGTGAAGAT  <  NC_002947/1358320‑1358242

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.