New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1358263	57 (1.080)	5 (0.100)	5/244	NT	7.7%	coding (1444/1608 nt)	PP_1182	sensor histidine kinase
	?	NC_002947	= 1358320	65 (1.280)					coding (1501/1608 nt)	PP_1182	sensor histidine kinase

GCAACGTTGCCGTATCGATGTGGAGGATGACGGCCCGGGGATCCCCGAGGGCTTCTGGGACCGCATCTTCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAG‑GCAGCAGGCACCGCTGTAAAGGTCAGACGCTGACCAGGCTCAGCAGGTGGCCGTCCTGCA  >  NC_002947/1358178‑1358468                                                                                                                                               |                                                                                                                                                      gCAACGTTGCCGTATCGATGTGGAGGATGACGGCCCGGGGATCCCCGAGGGCTTCTGGGACCGCATCTTCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGa                                                                                                                                                 <  5:182922/149‑1 (MQ=255)          ccGTATCGATGTGGAGGATGACGGCCCGGGGATCCCCGAGGGCTTCTGGGACCGCATCTTCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTAc                                                                                                                                         <  8:139342/148‑1 (MQ=255)           cGTATCGATGTGGAGGATGACGGCCCGGGGATCCCCGAGGGCTTCTGGGACCGCATCTTCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTg                                                                                                                                       <  8:325438/149‑1 (MQ=255)                 cttgcggaggaTGACGGCGCGGGGATCCCCGAGGGCTTCTGGGACCGCATCTTCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCAcgc                                                                                                                                 <  4:282023/144‑1 (MQ=255)                     tgGAGGATGACGGCCCGGGGATCCCCGAGGGCTTCTGGGACCGCATCTTCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGcgggc                                                                                                                             >  1:121237/1‑149 (MQ=255)                     tgGAGGATGACGGCCCGGGGATCCCCGAGGGCTTCTGGGACCGCATCTTCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGcggg                                                                                                                              <  1:4898/148‑1 (MQ=255)                        aggaTGACGGCCCGGGGATCCCCGAGGGCTTCTGGGACCGCATCTTCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGcgggccgg                                                                                                                          <  1:148570/149‑1 (MQ=255)                         ggaTGACGGCCCGGGGATCCCCGAGGGCTTCTGGGACCGCATCTTCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGcgggccggg                                                                                                                         >  6:21981/1‑149 (MQ=255)                             gACGGCCCGGGGATCCCCGAGGGCTTCTGGGACCGCATCTTCACGCCCTTCACCGGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCca                                                                                                                      <  6:138923/148‑1 (MQ=255)                                ggCCCGGGGATCCCCGAGGGCTTCTGGGACCGCATCTTCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTAc                                                                                                                                                       >  3:109624/1‑112 (MQ=255)                                ggCCCGGGGATCCCCGAGGGCTTCTGGGACCGCATCTTCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTAc                                                                                                                                                       <  4:109624/112‑1 (MQ=255)                                  cccGGGGATCCCCGAGGGCTTCTGGGACCGCATCTTCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTgg                                                                                                                <  2:121237/149‑1 (MQ=255)                                   ccGGGGATCCCCGAGGGCTTCTGGGACCGCATCTTCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGTGGatcatc                                                                                                                                            <  1:216520/120‑1 (MQ=255)                                   ccGGGGATCCCCGAGGGCTTCTGGGACCGCATCTTCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGTGGatcatc                                                                                                                                            >  2:216520/1‑120 (MQ=255)                                           ccccGAGGGCTTCTGGGACCGCATCTTCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCg                                                                                                       >  3:240832/1‑149 (MQ=255)                                             ccGAGGGCTTCTGGGACCGCATCTTCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGc                                                                                                        >  1:90356/1‑146 (MQ=255)                                             ccGAGGGCTTCTGGGACCGCATCTTCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGa                                                                                                      <  2:90356/148‑1 (MQ=255)                                             ccGAGGGCTTCTGGGACCGCATCTTCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAg                                                                                                     >  5:109433/1‑149 (MQ=255)                                             ccGAGGGCTTCTGGGACCGCATCTTCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAg                                                                                                     <  7:322016/149‑1 (MQ=255)                                              cGAGGGCTTCTGGGACCGCATCTTCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAgg                                                                                                    >  4:103412/1‑149 (MQ=255)                                                  ggCTTCTGGGACCGCATCTTCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGtt                                                                                                <  5:21981/149‑1 (MQ=255)                                                  ggCTTCTGGGACCGCATCTTCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGt                                                                                                 <  6:109433/148‑1 (MQ=255)                                                          ggACCGCATCTTCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCg                                                                                           <  3:103412/146‑1 (MQ=255)                                                          ggACCGCATCTTCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGt                                                                                         <  4:240832/148‑1 (MQ=255)                                                            aCCGCATCTTCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTg                                                                                                                 <  8:184196/122‑1 (MQ=255)                                                                cATCTTCACGCCCTTCCCCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGcgggccggg                                                                                                                         >  2:230011/1‑110 (MQ=255)                                                                cATCTTCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGcgggccggg                                                                                                                         <  1:230011/110‑1 (MQ=255)                                                                 aTCTTCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACggcgggtgaagggcgtgaagatgcggtcccagaagccctcg                                                                                                              >  4:145444‑M2/1‑79 (MQ=255)                                                                 aTCTTCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACggcgggtgaagggcgtgaagatgcggtcccagaagccctcg                                                                                                              <  3:145444‑M2/120‑42 (MQ=255)                                                                 aTCTTCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCtt                                                                                 >  3:152172/1‑149 (MQ=255)                                                                  tCTTCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCtt                                                                                 >  3:89329/1‑148 (MQ=255)                                                                     tCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCa                                                                                                          >  2:176211/1‑120 (MQ=255)                                                                     tCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCa                                                                                                          <  1:176211/120‑1 (MQ=255)                                                                      cACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGcc                                                                            >  1:51868/1‑149 (MQ=255)                                                                       aCGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCt                                                                           >  7:4591/1‑149 (MQ=255)                                                                          cccTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGaa                                                                        <  3:241631/149‑1 (MQ=255)                                                                           ccTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTg                                                                          >  1:214301/1‑146 (MQ=255)                                                                           ccTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTg                                                                          <  2:214301/146‑1 (MQ=255)                                                                               cACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACggcgggtgaagggcgtgaagatgcggtcccagaagccctcggggatccccgggccgtcatcctccacatcgatacggcaacgtt                                                                   <  4:197329‑M2/149‑85 (MQ=255)                                                                                  ccGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGcc                                                                  >  7:49994/1‑147 (MQ=255)                                                                                    gCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAg‑g                                                             <  8:4591/149‑1 (MQ=255)                                                                                      cTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAg‑g                                                             >  1:200519/1‑147 (MQ=255)                                                                                        cGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCT‑GTC‑ATCG‑Agcgggtgaagggcgtgaagatgcggtcccagaagccctcgg                                                                                                               <  8:98273‑M2/94‑42 (MQ=255)                                                                                        cGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCT‑GTC‑ATCG‑Agcgggtgaagggcgtgaagatgcggtcccagaagccctcgg                                                                                                               >  7:98273‑M2/1‑53 (MQ=255)                                                                                         gATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAG‑gcagca                                                        <  8:49994/149‑1 (MQ=255)                                                                                               aGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCTGGCCACAGTGGGCCCCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGACTGAACTGGCAAAG‑GCAGCAGGCAca                                                  >  8:11658/1‑148 (MQ=255)                                                                                               aGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCaa                                                                >  6:172112/1‑136 (MQ=255)                                                                                               aGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCaa                                                                <  5:172112/136‑1 (MQ=255)                                                                                               aGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAG‑GCAGCAGGCAcc                                                  >  2:53243/1‑149 (MQ=255)                                                                                                       ccGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGTCACAGTGGGCCGCAGCGAGGCGtt                                                                                                >  4:315717/1‑96 (MQ=255)                                                                                                       ccGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGTCACAGTGGGCCGCAGCGAGGCGtt                                                                                                <  3:315717/96‑1 (MQ=255)                                                                                                       ccGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAG‑GCAGCAGGCACCGCTGTa                                            >  5:264136/1‑147 (MQ=255)                                                                                                       ccGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAG‑GCAGCAGGCACCGCTGTa                                            >  5:158318/1‑147 (MQ=255)                                                                                                          tGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAG‑GCAGCAGGCACCGCTGTAAAGGt                                       <  2:200519/149‑1 (MQ=255)                                                                                                            ccTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAG‑GCAGCAGGCACCGCTGTAAAGGTCa                                     <  4:152172/149‑1 (MQ=255)                                                                                                               cgggcgggCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACTGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCt                                                                                     <  1:208839/99‑1 (MQ=255)                                                                                                               cgggcgggCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCt                                                                                     >  2:208839/1‑99 (MQ=255)                                                                                                                      gcACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAG‑GCAGCAGGCACCGCTGTAAAGGTCAGACGc                                >  8:97584/1‑144 (MQ=255)                                                                                                                      gcACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAG‑GCAGCAGGCACCGCTGTAAAGGTCAGACGc                                <  7:97584/144‑1 (MQ=255)                                                                                                                       cACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAGCGCAGCAGGCACCGCTGTAAAGGTCAGACGCTGAcc                           <  1:53243/149‑1 (MQ=255)                                                                                                                         cGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAG‑GCAGCAGGCACCGCTGTAAAGGTCAGACGCTGACCAgg                        <  2:51868/149‑1 (MQ=255)                                                                                                                           ggTTGGGCTTGTCGATCGTACGTCGTATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAG‑GCAGCAGGCACCGCTGTAAAGGTCAGACGCTGACCAGGCt                      <  7:11658/149‑1 (MQ=255)                                                                                                                            gTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAG‑GCAGCAGGCACCGCTGTAAAGGTCAGACGCTGAcc                           <  5:357741/143‑1 (MQ=255)                                                                                                                            gTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAG‑GCAGCAGGCACCGCTGTAAAGGTCAGACGCTGAcc                           >  6:357741/1‑143 (MQ=255)                                                                                                                                ggCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAG‑GCAGCAGGCACCGCTGTAAAGGTCAGACGCTGACCAGGCTcag                   >  2:127373/1‑147 (MQ=255)                                                                                                                                  cTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAG‑GCAGCAGGCACCGCTGTAAAGGTCAGACGCTGACCAGGCTCAGCAgg               >  4:144117/1‑149 (MQ=255)                                                                                                                                   ttGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAG‑GCAGCAGGCACCGCTGTAAAGGTCAGACGCTGACCAGGCTCAGCAGGt              <  6:264136/149‑1 (MQ=255)                                                                                                                                     gTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAG‑GCAGCAGGCACCGCTGTAAAGGTCAGACGCTGACCAGGCTCAGCAGGTgg            >  6:279434/1‑149 (MQ=255)                                                                                                                                        gATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAG‑gcagca                                                        <  1:40748/102‑1 (MQ=255)                                                                                                                                        gATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAG‑gcagca                                                        >  2:40748/1‑102 (MQ=255)                                                                                                                                        gATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAG‑GCAGCAGGCACCGCTGTAAAGGTCAGACGCTGACCAGGCTCAGCAGGTGGCCg         >  1:48026/1‑149 (MQ=255)                                                                                                                                         aTCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAg                                                               >  3:54870/1‑95 (MQ=255)                                                                                                                                         aTCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAg                                                               <  4:54870/95‑1 (MQ=255)                                                                                                                                            gTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAG‑GCAGCAGGCACCGCTGTAAAGGTCAGACGCTGACCAGGCTCAGCAGGTGGCCGTcc      <  4:89329/148‑1 (MQ=255)                                                                                                                                             tACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAg‑g                                                             >  4:283679/1‑92 (MQ=255)                                                                                                                                             tACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAg‑g                                                             <  3:283679/92‑1 (MQ=255)                                                                                                                                             tACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAG‑GCAGCAGGCACCGCTGTAAAGGTCAGACGCTGACCAGGCTCAGCAGGTGGCCGTCCTg    >  2:255103/1‑149 (MQ=255)                                                                                                                                             tACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAG‑GCAGCAGGCACCGCTGTAAAGGTCAGACGCTGACCAGGCTCAGCAGGTGGCCGTCCTg    >  1:167594/1‑149 (MQ=255)                                                                                                                                               cggcgggtgaagggcgtgaagatgcggtcccagaagccctcggggatccccgggccgtcatcctccacatcgatacggcaacgttgctggcccagctgatagctcaggcgcacttcgccctcggcatggcgcatggcattgccgacaag   >  3:197329‑M2/1‑1 (MQ=255)                                                                                                                                               cggcggATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAG‑GCAGCAGGCACCGCTGTAAAGGTCAGACGCTGACCAGGCTCAGCAGGTGGCCGTCCTgca  <  3:144117/149‑1 (MQ=255)                                                                                                                                               cggcggATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAG‑GCAGCAGGCACCGCTGTAAAGGTCAGACGCTGACCAGGCTCAGCAGGTGGCCGTCCTgc   <  2:167594/148‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                      GCAACGTTGCCGTATCGATGTGGAGGATGACGGCCCGGGGATCCCCGAGGGCTTCTGGGACCGCATCTTCACGCCCTTCACCCGCCTCGATGACAGCCGTACCCGTGCCTCGGGCGGGCACGGGTTGGGCTTGTCGATCGTACGGCGGATCATCTACTGGCACGCGGGCCGGGCCACAGTGGGCCGCAGCGAGGCGTTGGGCGGTGCCTGCTTCAGCCTGAACTGGCCAAG‑GCAGCAGGCACCGCTGTAAAGGTCAGACGCTGACCAGGCTCAGCAGGTGGCCGTCCTGCA  >  NC_002947/1358178‑1358468

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.