New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1406547 =	38 (0.720)	4 (0.080)	4/246	NT	9.3%	coding (554/1353 nt)	puuP	putrescine permease
	?	NC_002947	1406582 =	41 (0.800)					coding (519/1353 nt)	puuP	putrescine permease

TGTGCGTACGCGGCCTGGACCAGGGTGAAGGGCTGGGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1406586‑1406547 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtacGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGTTGATCAGGCTGATCAGGGTGACGAAGCCGGCCACCCACATCCACTCAGGCACTTCCGG  >  NC_002947/1406582‑1406728                                                                                                                                                                                             TGTGCGTACGCGGCCTGGACCAGGGTGAAGGGCTGGGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGTTGATCAGGCTGATCA                                             >  5:273196/1‑144 TGTGCGTACGCGGCCTGGACCAGGGTGAAGGGCTGGGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGTTGATCAGGCTGATCA                                             <  6:273196/144‑1   TGCGTACGCGGCCTGGACCAGGGTGAAGGGCTGGGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGTTGATCAGGCTGATCAGGGTGAC                                      >  5:311218/1‑149                             AGGGCTGGGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGTTGATCAGGCTGATCAGGGTGACGAAGCCGGCCACCCACATCCACTCAG            <  6:311218/149‑1                                        CGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGTTGATCAGGCTGATCAGGGTGACGAAGCCGGCCACCCACATCCACTCAGGCACTTCCGG  <  6:109311/148‑1                                                                                                                                                                                             TGTGCGTACGCGGCCTGGACCAGGGTGAAGGGCTGGGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1406586‑1406547 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtacGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGTTGATCAGGCTGATCAGGGTGACGAAGCCGGCCACCCACATCCACTCAGGCACTTCCGG  >  NC_002947/1406582‑1406728

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.