New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1406547 =	38 (0.720)	4 (0.080)	4/246	NT	9.3%	coding (554/1353 nt)	puuP	putrescine permease
	?	NC_002947	1406582 =	41 (0.800)					coding (519/1353 nt)	puuP	putrescine permease

GGAATGGTCTTGGCCGGATCGCGGGTTTCCTCGGACAGGCAGGTGACTGCGTCAAAGCCCAGGAACGAGAAGCACAGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGTTGATCAGGCTGATCAGGGT  >  NC_002947/1406400‑1406689                                                                                                                                                    |                                                                                                                                               ccggaagtgcctgagtggatgtgggtggccggcttcgtcaccctgatcagcctgatcaacatgcgcagcgtgaacctggtggcgcacttcaacctgctgttcgtgggtgtgcaggtggcgatcatcgccgtgttcatctacctgtgcg                                                                                                                                                <  6:109311‑M1/1‑1 (MQ=255)    aTGGTCTTGGCCGGATCGCGGGTTTCCTCGGACAGGCAGGTGACTGCGTCAAAGCCCAGGAACGAGAAGCACAGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTAcc                                                                                                                                            <  6:68090/149‑1 (MQ=255)     tGGTCTTGGCCGGATCGCGGGTTTCCTCGGACAGGCAGGTGACTGCGTCAAAGCCCAGGAACGAGAAGCACAGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTAccc                                                                                                                                           <  7:16886/149‑1 (MQ=255)       gTCTTGGCCGGATCGCGGGTTTCCTCGGACAGGCAGGTGACTGCGTCAAAGCCCAGGAACGAGAAGCACAGGATGGTAGCACCGGCGGCCAGGGAGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAg                                                                                                                                         >  8:98229/1‑149 (MQ=255)           ctgagtggatgtgggtggccggcttcgtcaccctgatcagcctgatcaacatgcgcagcgtgaacctggtggcgcacttcaacctgctgttcgtgggtgtgcaggtggcgatcatcgccgtgttcatctacctgtgcGTACCCAGCCCt                                                                                                                                     <  6:311218‑M1/12‑1 (MQ=255)                         gTTTCCTCGGACAGGCAGGTGACTGCGTCAAAGCCCAGGAACGAGAAGCACAGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAg                                                                                                                       >  7:227104/1‑149 (MQ=255)                            tCCTCGGACAGGCAGGTGACTGCGTCAAAGCCCAGGAACGAGAAGCACAGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGc                                                                                                                     <  7:98229/148‑1 (MQ=255)                                     gtcaccctgatcagcctgatcaacatgcgcagcgtgaacctggtggcgcacttcaacctgctgttcgtgggtgtgcaggtggcgatcatcgccgtgttcatctacctgtgcGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGca                                                                                                           >  5:311218‑M1/112‑149 (MQ=255)                                         aggTGACTGCGTCAAAGCCCAGGAACGAGAAGCACAGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAgg                                                                                                       >  6:236907/1‑149 (MQ=255)                                          tgTGACTGCGTCAAAGCCCAGGAACTAGAAGCACAGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGt                                                                                                      <  3:293418/148‑1 (MQ=255)                                          ggTGACTGCGTCAAAGCCCAGGAACGAGAAGCACAGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGt                                                                                                      <  3:288467/149‑1 (MQ=255)                                            tgatcagcctgatcaacatgcgcagcgtgaacctggtggcgcacttcaacctgctgttcgtgggtgtgcaggtggcgatcatcgccgtgttcatctacctgtgcGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGcaca                                                                                                         <  6:273196‑M1/40‑1 (MQ=255)                                            tgatcagcctgatcaacatgcgcagcgtgaacctggtggcgcacttcaacctgctgttcgtgggtgtgcaggtggcgatcatcgccgtgttcatctacctgtgcGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGcaca                                                                                                         >  5:273196‑M1/105‑144 (MQ=255)                                              aCTGCGTGAAAGGCGATGAACGAGTAGCAGAGGATGGTCGGATTGGCGGGCATGGCGCTGAAGTGGGTCTGGCTGTCGGCGATCGGTTTGAGGCTCCAGTTGGTAGCCAGGCCTTGTCCCTGGTCCAGGCGGGGTTCGCTCAGGTAGAt                                                                                                  <  2:116128/149‑1 (MQ=255)                                              aCTGCGTCAAAGCCCAGGAACGAGAAGCACAGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGAt                                                                                                  <  5:236907/149‑1 (MQ=255)                                              aCTGCGTCAAAGCCCAGGAACGAGAAGCACAGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGAt                                                                                                  <  5:339432/149‑1 (MQ=255)                                                tGCGTCAAAGCCCAGGAACGAGAAGCACAGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATg                                                                                                 >  3:300312/1‑148 (MQ=255)                                                   gTCAAAGCCCAGGAACGAGAAGCACAGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAaca                                                                                             >  4:116641/1‑149 (MQ=255)                                                      aaaGCCCAGGAACGAGAAGCACAGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAggtgg                                                                                                                                                <  6:212635/95‑1 (MQ=255)                                                      aaaGCCCAGGAACGAGAAGCACAGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAggtgg                                                                                                                                                >  5:212635/1‑95 (MQ=255)                                                      aaaGCCCAGGAACGAGAAGCACAGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGt                                                                                                                >  3:140874/1‑127 (MQ=255)                                                      aaaGCCCAGGAACGAGAAGCACAGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGt                                                                                                                <  4:140874/127‑1 (MQ=255)                                                         gCCCAGGAACGAGAAGCACAGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCcgc                                                                                                                  >  2:265052/1‑122 (MQ=255)                                                         gCCCAGGAACGAGAAGCACAGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCACGCCGCGTACGCACACCTAGATCAACACcgcg                                                                                        >  2:336264/1‑148 (MQ=255)                                                            cAGGAACGAGAAGCACAGGATGGTCGCACCGTCCGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGGTCAAGGTGGTGCCCAGCCCTTCAACCAGGTCCAGGCCGCGGACGCACAGGTAGATGAAAACGGGcatga                                                                                    >  8:123268/1‑149 (MQ=255)                                                              ggAACGAGAAGCACTGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGTTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATc                                                                                  <  1:336264/149‑1 (MQ=255)                                                                         cacaGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCgatg                                                                                     <  8:282274/135‑1 (MQ=255)                                                                         cacaGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCgatg                                                                                     >  7:282274/1‑135 (MQ=255)                                                                            aGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACAcc                                                                    <  3:339326/149‑1 (MQ=255)                                                                              gATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCgatgat                                                                                   >  1:251214/1‑132 (MQ=255)                                                                              gATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCgatgat                                                                                   <  2:251214/132‑1 (MQ=255)                                                                                     gCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAAca                                                            <  8:227104/148‑1 (MQ=255)                                                                                       aCCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACgg                                                                                          >  8:270028/1‑116 (MQ=255)                                                                                         cggcggCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAgg                                                       >  6:198724/1‑149 (MQ=255)                                                                                          ggcggcCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGt                                                      <  5:198724/149‑1 (MQ=255)                                                                                                           aCTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAgg                                     >  1:62043/1‑149 (MQ=255)                                                                                                            cTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGt                                    >  1:334542/1‑149 (MQ=255)                                                                                                               ggTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTc                                  <  4:300312/148‑1 (MQ=255)                                                                                                               ggTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCa                                 >  4:220427/1‑149 (MQ=255)                                                                                                                     gCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTgc                                              <  3:83808/130‑1 (MQ=255)                                                                                                                     gCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTgc                                              >  4:83808/1‑130 (MQ=255)                                                                                                                           ggCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGt                     <  2:62043/149‑1 (MQ=255)                                                                                                                           ggCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGt                     >  5:109311/1‑149 (MQ=255)                                                                                                                                    tATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGTTGATctgaa            >  2:159207/1‑145 (MQ=255)                                                                                                                                              cAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGTTGATCAGGCTGATCAGGGt  <  6:73118/149‑1 (MQ=255)                                                                                                                                              cAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGTTGATCAGGCTGATCAGGGt  >  5:73118/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                               GGAATGGTCTTGGCCGGATCGCGGGTTTCCTCGGACAGGCAGGTGACTGCGTCAAAGCCCAGGAACGAGAAGCACAGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGTTGATCAGGCTGATCAGGGT  >  NC_002947/1406400‑1406689

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.