New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1406547 =	38 (0.720)	4 (0.080)	4/246	NT	9.3%	coding (554/1353 nt)	puuP	putrescine permease
	?	NC_002947	1406582 =	41 (0.800)					coding (519/1353 nt)	puuP	putrescine permease

AGGCAGGTGACTGCGTCAAAGCCCAGGAACGAGAAGCACAGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGTTGATCAGGCTGATCAGGGTGACGAAGCCGGCCACCCACATCCACTCAGGCACTTCCGG  >  NC_002947/1406436‑1406728                                                                                                                                                   |                                                                                                                                                   gtcaccctgatcagcctgatcaacatgcgcagcgtgaacctggtggcgcacttcaacctgctgttcgtgggtgtgcaggtggcgatcatcgccgtgttcatctacctgtgcGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGca                                                                                                                                                  >  5:311218‑M1/112‑149 (MQ=255)     aggTGACTGCGTCAAAGCCCAGGAACGAGAAGCACAGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAgg                                                                                                                                              >  6:236907/1‑149 (MQ=255)      tgTGACTGCGTCAAAGCCCAGGAACTAGAAGCACAGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGt                                                                                                                                             <  3:293418/148‑1 (MQ=255)      ggTGACTGCGTCAAAGCCCAGGAACGAGAAGCACAGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGt                                                                                                                                             <  3:288467/149‑1 (MQ=255)        tgatcagcctgatcaacatgcgcagcgtgaacctggtggcgcacttcaacctgctgttcgtgggtgtgcaggtggcgatcatcgccgtgttcatctacctgtgcGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGcaca                                                                                                                                                >  5:273196‑M1/105‑144 (MQ=255)        tgatcagcctgatcaacatgcgcagcgtgaacctggtggcgcacttcaacctgctgttcgtgggtgtgcaggtggcgatcatcgccgtgttcatctacctgtgcGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGcaca                                                                                                                                                <  6:273196‑M1/40‑1 (MQ=255)          aCTGCGTGAAAGGCGATGAACGAGTAGCAGAGGATGGTCGGATTGGCGGGCATGGCGCTGAAGTGGGTCTGGCTGTCGGCGATCGGTTTGAGGCTCCAGTTGGTAGCCAGGCCTTGTCCCTGGTCCAGGCGGGGTTCGCTCAGGTAGAt                                                                                                                                         <  2:116128/149‑1 (MQ=255)          aCTGCGTCAAAGCCCAGGAACGAGAAGCACAGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGAt                                                                                                                                         <  5:236907/149‑1 (MQ=255)          aCTGCGTCAAAGCCCAGGAACGAGAAGCACAGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGAt                                                                                                                                         <  5:339432/149‑1 (MQ=255)            tGCGTCAAAGCCCAGGAACGAGAAGCACAGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATg                                                                                                                                        >  3:300312/1‑148 (MQ=255)               gTCAAAGCCCAGGAACGAGAAGCACAGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAaca                                                                                                                                    >  4:116641/1‑149 (MQ=255)                     gCCCAGGAACGAGAAGCACAGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCACGCCGCGTACGCACACCTAGATCAACACcgcg                                                                                                                               >  2:336264/1‑148 (MQ=255)                        cAGGAACGAGAAGCACAGGATGGTCGCACCGTCCGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGGTCAAGGTGGTGCCCAGCCCTTCAACCAGGTCCAGGCCGCGGACGCACAGGTAGATGAAAACGGGcatga                                                                                                                           >  8:123268/1‑149 (MQ=255)                          ggAACGAGAAGCACTGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGTTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATc                                                                                                                         <  1:336264/149‑1 (MQ=255)                                     cacaGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCgatg                                                                                                                            >  7:282274/1‑135 (MQ=255)                                     cacaGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCgatg                                                                                                                            <  8:282274/135‑1 (MQ=255)                                        aGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACAcc                                                                                                           <  3:339326/149‑1 (MQ=255)                                          gATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCgatgat                                                                                                                          <  2:251214/132‑1 (MQ=255)                                          gATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCgatgat                                                                                                                          >  1:251214/1‑132 (MQ=255)                                                 gCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAAca                                                                                                   <  8:227104/148‑1 (MQ=255)                                                   aCCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACgg                                                                                                                                 >  8:270028/1‑116 (MQ=255)                                                     cggcggCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAgg                                                                                              >  6:198724/1‑149 (MQ=255)                                                      ggcggcCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGt                                                                                             <  5:198724/149‑1 (MQ=255)                                                                       aCTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAgg                                                                            >  1:62043/1‑149 (MQ=255)                                                                        cTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGt                                                                           >  1:334542/1‑149 (MQ=255)                                                                           ggTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTc                                                                         <  4:300312/148‑1 (MQ=255)                                                                           ggTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCa                                                                        >  4:220427/1‑149 (MQ=255)                                                                                 gCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTgc                                                                                     >  4:83808/1‑130 (MQ=255)                                                                                 gCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTgc                                                                                     <  3:83808/130‑1 (MQ=255)                                                                                       ggCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGt                                                            >  5:109311/1‑149 (MQ=255)                                                                                       ggCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGt                                                            <  2:62043/149‑1 (MQ=255)                                                                                                tATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGTTGATctgaa                                                   >  2:159207/1‑145 (MQ=255)                                                                                                          cAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGTTGATCAGGCTGATCAGGGt                                         >  5:73118/1‑149 (MQ=255)                                                                                                          cAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGTTGATCAGGCTGATCAGGGt                                         <  6:73118/149‑1 (MQ=255)                                                                                                           tgtgcgtacgcggcctggaccagggtgaagggctgggtacGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGTTGATCAGGCTGATCa                                             >  5:273196‑M2/41‑144 (MQ=255)                                                                                                           tgtgcgtacgcggcctggaccagggtgaagggctgggtacGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGTTGATCAGGCTGATCa                                             <  6:273196‑M2/104‑1 (MQ=255)                                                                                                             tgcgtacgcggcctggaccagggtgaagggctgggtacGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGTTGATCAGGCTGATCAGGGTGAc                                      >  5:311218‑M2/39‑149 (MQ=255)                                                                                                                    ccAGCCCTTCACCCTGGTCCAGGCCGCGTACGCTCAGGTAGATGAACACGGCGATGAGCGCCACCTGCACACCCACGAACATCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGTTGATCAGGCTGATCAGGGTGACGAAGCCg                               <  7:123268/149‑1 (MQ=255)                                                                                                                    ccAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGTTGATCAGGCTGATCAGGGTGACGAAGCCg                               <  3:116641/149‑1 (MQ=255)                                                                                                                        cccTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGTTGATCAGGCTGATCAGGGTGACGAAGCCGGcca                           >  8:36160/1‑149 (MQ=255)                                                                                                                          cTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGTTGATCAGGCTGATCAGGGTGACGAAGCCGGccacc                         >  1:90904/1‑149 (MQ=255)                                                                                                                           ttCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATc                                                                                                                         <  3:89349/52‑1 (MQ=255)                                                                                                                           ttCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATc                                                                                                                         >  4:89349/1‑52 (MQ=255)                                                                                                                                ccTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGTTGATCAGGCTGATCAGGGTGACGAAGCCGGCCACCCACATc                   <  3:220427/149‑1 (MQ=255)                                                                                                                                ccTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGTTGATCAGGCTGATCAGGGTGACGAAGCCGGCCACCCACATc                   >  2:111873/1‑149 (MQ=255)                                                                                                                                       cAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGTTGATCAGGc                                                   >  4:347460/1‑110 (MQ=255)                                                                                                                                       cAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGTTGATCAGGCTGATCAGGGTGACGAAGCCGGCCACCCACATCCACTCAg            <  2:90904/149‑1 (MQ=255)                                                                                                                                       agggctgggtacGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGTTGATCAGGCTGATCAGGGTGACGAAGCCGGCCACCCACATCCACTCAg            <  6:311218‑M2/137‑1 (MQ=255)                                                                                                                                                  cGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGTTGATCAGGCTGATCAGGGTGACGAAGCCGGCCACCCACATCCACTCAGGCACTTCCgg  <  6:109311‑M2/147‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                   AGGCAGGTGACTGCGTCAAAGCCCAGGAACGAGAAGCACAGGATGGTCGCACCGGCGGCCAGGGCGCTGAACTGGGTCTGGCTGTCGGCGAACGGTATCAGGCTCCAGGTGGTACCCAGCCCTTCACCCTGGTCCAGGCCGCGTACGCACAGGTAGATGAACACGGCGATGATCGCCACCTGCACACCCACGAACAGCAGGTTGAAGTGCGCCACCAGGTTCACGCTGCGCATGTTGATCAGGCTGATCAGGGTGACGAAGCCGGCCACCCACATCCACTCAGGCACTTCCGG  >  NC_002947/1406436‑1406728

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.