New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1419549 =	17 (0.320)	4 (0.080)	4/230	NT	13.2%	intergenic (‑38/+98)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	= 5238649	37 (0.770)					coding (161/204 nt)	PP_5701	hypothetical protein

CTCCCACAG‑GGTCACCACAGCCGTCACGCACTGCAC‑AGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1419617‑1419549 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcgaagagGCCGGCCCTTCCGGCACGTTAACCAGCCTTAGTGCGAAGTTCCTGGGCTCAGCGGACATCTGCACCTGAACCAGCGCCGACTCAAGAAGAGGCCGCAGCGCCTCCAGTTCATGCATCGTGCCATGCCTCAAGGTGCCTT  <  NC_002947/5238649‑5238511                                                                                                                                                                                                                    CTCCCACAGCGGTCACCACAGTAGTCAAGACTTGCAC‑AGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTTCCGGCACGTTAACCAGCCTTAGTGCGAAGTTCCTGGGCTCAGCGGACATCTGCACCTGACCCAGCGCC                                                               >  1:327916/1‑148  TCCCACAGCGGTCACCACAGTAGTCAAGACTTGCACGAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGGCACGTTAACCAGCCTTAGTGCGAAGTTCCTGGGCTCAGCGGACATCTGCACCTGAACCAGCGCC                                                               >  1:58292/1‑148   CCCACAGCGGTCACCACACTAGTCAAGCCTTTCAC‑AGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTTCCGGCACGTTAACCAGCCTTAGTGCGAAGTTCCTGGGCTCAGCGGACATCTGCACCTGAACCAGCGCCGAC                                                            <  2:327916/149‑1                                     C‑AGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGGCACGTTAACCAGCCTTAGTGCGAAGTTCCTGGGCTCAGCGGACATCTGCACCTGAACCAGCGCCGACTCAAGAAGAGGCCGCAGCGCCTCCAGTTCATGCA                          <  2:58292/149‑1                                                             CCCGCGAAGAGGCCGGCCCTTCCGGCACGTTAACCAGCCTTAGTGCGAAGTTCCTGGGCTCAGCGGACATC                                                                                 >  2:323516/1‑71                                                              CCGCGAAGAGGCCGGCCCTTCCGGCACGTTAACCAGCCTTAGTGCGAAGTTCCTGGGCTCAGCGGACATCTGCACCTGAACCAGCGCCGACTCAAGAAGAGGCCGCAGCGCCTCCAGTTCATGCATCGTGCCATGCCTCAAGGTGCCTT  >  7:47546/1‑149                                                               CGCGAAGAGGCCGGCCCTTCCGGCACGTTAACCAGCCTTAGTGCGAAGTTCCTGGGCTCAGCGGACATCTGCACCTGAACCAGCGCCGACTCAAGAAGAGGCCGCAGCGCCTCCAGTTCAT                             >  7:119369/1‑121                                                               CGCGAAGAGGCCGGCCCTTCCGGCACGTTAACCAGCCTTAGTGCGAAGTTCCTGGGCTCAGCGGACATCTGCACCTGAACCAGCGCCGACTCAAGAAGAGGCCGCAGCGCCTCCAGTTCAT                             <  8:119369/121‑1                                                                                                                                                                                                                    CTCCCACAG‑GGTCACCACAGCCGTCACGCACTGCAC‑AGTACCTGTGGGAGCGGGCGTGCCCGCGAAGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1419617‑1419549 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcgaagagGCCGGCCCTTCCGGCACGTTAACCAGCCTTAGTGCGAAGTTCCTGGGCTCAGCGGACATCTGCACCTGAACCAGCGCCGACTCAAGAAGAGGCCGCAGCGCCTCCAGTTCATGCATCGTGCCATGCCTCAAGGTGCCTT  <  NC_002947/5238649‑5238511

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.