New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1419549 =	17 (0.320)	4 (0.080)	4/230	NT	13.2%	intergenic (‑38/+98)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
	?	NC_002947	= 5238649	37 (0.770)					coding (161/204 nt)	PP_5701	hypothetical protein

AAGGCACCTTGAGGCATGGCACGATGCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCAC‑AGTAGT‑CAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCGGCCATGCACCGTCGCAGCCGCCACCCCATTC  >  NC_002947/5238511‑5238795                                                                                                                                           |                                                                                                                                                     aaGGCACCTTGAGGCATGGCACGATGCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCctcttcgcgg                                                                                                                                            >  7:47546‑M2/1‑139 (MQ=255)      aCCTTGAGGCATGGCACGATGCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCg                                                                                                                                       >  1:180163/1‑149 (MQ=255)               cATGGCACGATGCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTccc                                                                                                                              <  3:277714/149‑1 (MQ=255)               aaTGGCACGATGCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGTCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTTCCGGAAGTGCCGGCCTCTTCGCGGGCTCGCCCGCTccc                                                                                                                              <  3:272951/148‑1 (MQ=255)                 tGGCACGATGCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCca                                                                                                                             >  3:69519/1‑148 (MQ=255)                      cGATGCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCgg                                                                                                                       <  6:101104/149‑1 (MQ=255)                      cGATGCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCgg                                                                                                                       <  8:228623/149‑1 (MQ=255)                         tGCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGCAGGTCCGGCcctttcgcgggcacgcccgctcccacaggtactg                                                                                                                    <  2:58292‑M2/149‑35 (MQ=255)                          gCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAg                                                                                                                          <  7:300303/142‑1 (MQ=255)                          gCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAg                                                                                                                          >  8:300303/1‑142 (MQ=255)                           cATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTcac                                                                                                                   <  2:180163/148‑1 (MQ=255)                            aTGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCctcttcgcg                                                                                                                                             <  8:119369‑M2/121‑10 (MQ=255)                            aTGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCctcttcgcg                                                                                                                                             >  7:119369‑M2/1‑112 (MQ=255)                             tGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCca                                                                                                                             <  7:314837/136‑1 (MQ=255)                             tGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCca                                                                                                                             >  8:314837/1‑136 (MQ=255)                                 cTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCcac                                                                                                                            >  3:216299/1‑133 (MQ=255)                                 cTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCcac                                                                                                                            <  4:216299/133‑1 (MQ=255)                                 cTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCAC‑agta                                                                                                           <  4:69519/149‑1 (MQ=255)                                  tGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCg                                                                                                                        <  1:179705/136‑1 (MQ=255)                                                ccTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCAC‑AGTAGT‑CAAGACTTGca                                                                                             >  2:24053/1‑147 (MQ=255)                                                    ttcttGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCg                                                                                                                        <  4:280537/118‑1 (MQ=255)                                                    ttcttGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCg                                                                                                                        >  3:280537/1‑118 (MQ=255)                                                    ttcttGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCAC‑AGTAGT‑CAAGACTTGCACAGt                                                                                         <  1:88514/147‑1 (MQ=255)                                                      cttGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCAC‑AGTAGT‑CAAGACTTGCACAGTACCt                                                                                     >  8:197175/1‑149 (MQ=255)                                                          aGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCAC‑AGTAGT‑CAAGACTTGCACAGTACCTGTgg                                                                                 <  6:172870/149‑1 (MQ=255)                                                           gTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGTCCGGCcctttcgcgggcacgcccgctcccacaggtactgtgaaaggcttgactagtgtggtgaccgctgtggg                                                                                  <  2:327916‑M2/149‑69 (MQ=255)                                                              ggCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGCAGGTCCGGCcctttcgcgggcacgcccgctcccacaggtactcgtgcaagtcttgactactgtggtgaccgctgtggga                                                                                >  1:58292‑M2/1‑78 (MQ=255)                                                              ggCGCTGGGTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGTCCGGCcctttcgcgggcacgcccgctcccacaggtactgtgcaagtcttgactactgtggtgaccgctgtgggag                                                                                >  1:327916‑M2/1‑78 (MQ=255)                                                                          ggTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCAC‑AGTAGT‑CAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCcgc                                                                 <  7:197175/149‑1 (MQ=255)                                                                                gATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCctcttcgcggg                                                                                                                                           >  2:323516‑M2/1‑60 (MQ=255)                                                                                gATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCAC‑AGTAGT‑CAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGaaaag                                                           >  7:280093/1‑147 (MQ=255)                                                                                  tGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCAC‑AGTAGT‑CAAGCCTTGCACAGTACCAGTGGGAGCGGGCGTGCCCGCGAAAGGGc                                                         >  3:9245/1‑149 (MQ=255)                                                                                  tGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCAC‑AGTAGT‑CAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGc                                                         <  1:24053/149‑1 (MQ=255)                                                                                    tCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCAC‑AGTAGT‑CAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGTCCg                                                       >  4:236479/1‑149 (MQ=255)                                                                                    tCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCAC‑AGTAGT‑CAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAAGGCCg                                                       <  8:280093/149‑1 (MQ=255)                                                                                     ccGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGggccggc                                                                                                                                                      <  3:59049/55‑1 (MQ=255)                                                                                     ccGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGggccggc                                                                                                                                                      >  4:59049/1‑55 (MQ=255)                                                                                      cGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCAC‑AGTAGT‑CAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGa                                                     >  8:92849/1‑149 (MQ=255)                                                                                                 ggAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCAC‑AGTAGT‑CAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACa                                           >  8:18244/1‑148 (MQ=255)                                                                                                   aaCTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCAC‑AGTAGT‑CAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAat                                        <  7:92849/149‑1 (MQ=255)                                                                                                      ttCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCAC‑AGTAGT‑CAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATc                                     >  4:31267/1‑149 (MQ=255)                                                                                                             tAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCAC‑AGTAGT‑CAAGACTTGca                                                                                             <  4:280803/86‑1 (MQ=255)                                                                                                              aaGGGTGGTTACCGGTCCGGATGGGCCGGCCTCTTCGGGGGCTCGCCGGCTCCCACACCGGTCACCAC‑TTTAGT‑CAATAGTTTCAAATTCCCTGTGGGAGGGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCGGcc                              <  4:9245/148‑1 (MQ=255)                                                                                                                     gTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCACAAGTAGT‑CAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATAACCCCGGCCATGCAcc                       >  1:104585/1‑149 (MQ=255)                                                                                                                           gTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCAC‑AGTAGT‑CAAGACTTGc                                                                                              >  6:87366/1‑71 (MQ=255)                                                                                                                           gTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCAC‑AGTAGT‑CAAGACTTGc                                                                                              <  5:87366/71‑1 (MQ=255)                                                                                                                           gTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCAC‑AGTAGT‑CAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCGGCCATGCACCGTCGCAg                >  6:80444/1‑149 (MQ=255)                                                                                                                                 gAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCAC‑AGTAGTGCAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCGGCCATGCACCGTCGCAgccgcc           >  1:270664/1‑149 (MQ=255)                                                                                                                                         ggccTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCAC‑AGTAGT‑CAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCGGCCATGCACCGTCGCAGCCGCCACCCCATTc  <  5:80444/149‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                     AAGGCACCTTGAGGCATGGCACGATGCATGAACTGGAGGCGCTGCGGCCTCTTCTTGAGTCGGCGCTGGTTCAGGTGCAGATGTCCGCTGAGCCCAGGAACTTCGCACTAAGGCTGGTTAACGTGCCGGAAGGGCCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGCGGTCACCAC‑AGTAGT‑CAAGACTTGCACAGTACCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCGGACCTGCCGACAAATATCCCCGGCCATGCACCGTCGCAGCCGCCACCCCATTC  >  NC_002947/5238511‑5238795

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.