New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1728639 =	57 (1.080)	4 (0.080)	4/238	NT	6.8%	intergenic (+33/+90)	cspA‑I/PP_1523	major cold shock protein/hypothetical protein
	?	NC_002947	1728692 =	56 (1.130)					intergenic (+86/+37)	cspA‑I/PP_1523	major cold shock protein/hypothetical protein

GATGCTGACCGCTGGGTCCGCATCAGCGCCGACGGTGAAGAGGAAATCACCTGGCGTACATCATGAAACGGCAGGCTTGCTCGTTTCTGTAGGAATGGGTTTACCCGCGAATACGGGCTATGCCCGTGGCAGCCACCGTGGTGGCTGCTTCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1728794‑1728639 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCTTCTTCCCCGTCTTCCTCGACCCAGCCACCCGGCGCGCAGCGCAC  >  NC_002947/1728692‑1728839                                                                                                                                                                                                                                                                                                                  GATGCTGACCGCTGGGTCCGCATCAGCGCCGACGGTGAAGAGGAAATCACCTGGCGTACATCATGAAACGGCAGGCTTGCTCGTTTCTGTAGGAATGGGTTTACCCGCGAATACGGGCTATGCCCGTGGCAGCCACCGTGGTGGCTGCT                                                                                                                                                             >  8:187988/1‑149   TGCTGACCGCTGGGTCCGCATCAGCGCCGACGGTGAAGAGGAAATCACCTGGCGTACATCATGAAACGGCAGGCTTGCTCGTTTCTGTAGGAATGGGTTTACCCGCGAATACGGGCTATGCCCGTGGCAGCCACCGTGGTGGCTGCTTC                                                                                                                                                           >  6:43616/1‑149                                           GAAATCACCTGGCGTACATCATGAAACGGCAGGCTTGCTCGTTTCTGTAGGAATGGGTTTACCCGCGAATACGGGCTATGCCCGTGGCAGCCACCGTGGTGGCTGCTTCGCGG                                                                                                                                                       >  1:80698/1‑113                                           GAAATCACCTGGCGTACATCATGAAACGGCAGGCTTGCTCGTTTCTGTAGGAATGGGTTTACCCGCGAATACGGGCTATGCCCGTGGCAGCCACCGTGGTGGCTGCTTCGCGG                                                                                                                                                       <  2:80698/113‑1                                                                                          TAGGAATGGGTTTACCCGCGAATACGGGCTATGCCCGTGGCAGCCACCGTGGTGGCTGCTTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGAT                                                                    >  8:237099/1‑149                                                                                            GGAATGGGTTTACCCGCGAATACGGGCTATGCCCGTGGCAGCCACCGTGGTGGCTGCTTGGCGGGTAAACCCATTCCTACTGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGC                                                                  >  7:228292/1‑149                                                                                                           GCGAATACGGGCTATGCCCGTGGCAGCCACCGTGGTGGCTGCTTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTC                                                                                      <  7:160864/114‑1                                                                                                           GCGAATACGGGCTATGCCCGTGGCAGCCACCGTGGTGGCTGCTTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTC                                                                                      >  8:160864/1‑114                                                                                                                                                           GGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCTTCTTCCCCGTCTTCCTCGACCCAGCCACCCGGCGCGCAGCGCA   <  5:58947/149‑1                                                                                                                                                            GTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCTTCTTCCCCGTCTTCCTCGACCCAGCCACCCGGCGCGCAGCGCAC  >  6:141974/1‑149                                                                                                                                                                                                                                                                                                                  GATGCTGACCGCTGGGTCCGCATCAGCGCCGACGGTGAAGAGGAAATCACCTGGCGTACATCATGAAACGGCAGGCTTGCTCGTTTCTGTAGGAATGGGTTTACCCGCGAATACGGGCTATGCCCGTGGCAGCCACCGTGGTGGCTGCTTCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1728794‑1728639 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGCGGACCCAGCGGTCAGCATCTTCTTCCCCGTCTTCCTCGACCCAGCCACCCGGCGCGCAGCGCAC  >  NC_002947/1728692‑1728839

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.