New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1728639 =	57 (1.080)	4 (0.080)	4/238	NT	6.8%	intergenic (+33/+90)	cspA‑I/PP_1523	major cold shock protein/hypothetical protein
	?	NC_002947	1728692 =	56 (1.130)					intergenic (+86/+37)	cspA‑I/PP_1523	major cold shock protein/hypothetical protein

ACTATCGGGCGATCCGCGGTGAGGGGCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGC  >  NC_002947/1728491‑1728775                                                                                                                                                     |                                                                                                                                         gtgcgctgcgcgccgggtggctgggtcgaggaagacggggaagaagatgctgaccgctgggtccgcatcagcgccgacggtgaagaggaaatcacctggcgtacatcatgaaacggcaggcttgctcgtttctgtaggaatgggtttac                                                                                                                                          >  6:141974‑M1/149‑149 (MQ=255)  tgcgctgcgcgccgggtggctgggtcgaggaagacggggaagaagatgctgaccgctgggtccgcatcagcgccgacggtgaagaggaaatcacctggcgtacatcatgaaacggcaggcttgctcgtttctgtaggaatgggtttacc                                                                                                                                         <  5:58947‑M1/2‑1 (MQ=255)       gggCGATCCGCGGTGAGGGGCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCcgcg                                                                                                                                     >  1:127919/1‑148 (MQ=255)          cGATCCGCGGTGAGGGGCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAagc                                                                                                                                 <  2:91683/149‑1 (MQ=255)           gATCCGCGGTGAGGGGCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGGACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAagca                                                                                                                                <  3:64851/149‑1 (MQ=255)              ccGCGGTGAGGGGCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAagcagc                                                                                                                              >  5:35730/1‑148 (MQ=255)                      aGGGGCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGt                                                                                                                     <  4:241852/149‑1 (MQ=255)                          gCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCt                                                                                                                 <  2:226387/149‑1 (MQ=255)                          gCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCt                                                                                                                 <  6:35730/149‑1 (MQ=255)                             tCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGc                                                                                                               >  7:326168/1‑148 (MQ=255)                                  cccTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACggg                                                                                                         <  2:127919/149‑1 (MQ=255)                                      ggTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGAAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCAACCACGGTGGCTCCCACGGGCaa                                                                                                      >  8:218494/1‑147 (MQ=255)                                        tCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGc                                                                                                   >  7:319240/1‑149 (MQ=255)                                         cGAAGGGCTGCGGGTGGAGTACGCCTGCGTGCAGGTCCAGTAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCTGCCACCACGGTGGCTGCCACgg                                                                                                          <  2:165637/141‑1 (MQ=255)                                         cGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACgg                                                                                                          >  1:165637/1‑141 (MQ=255)                                          gAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGccc                                                                                                 <  6:331628/149‑1 (MQ=255)                                          gAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGccc                                                                                                 >  5:285410/1‑149 (MQ=255)                                                cAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGTCTg                                                                                                                >  1:88513/1‑128 (MQ=255)                                                cAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTg                                                                                                                <  2:88513/128‑1 (MQ=255)                                                    gggTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCgg                                                                                       <  8:326168/149‑1 (MQ=255)                                                    gggTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCgg                                                                                       <  7:218494/149‑1 (MQ=255)                                                         gAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTaaa                                                                                  >  4:23829/1‑149 (MQ=255)                                                               gCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAAcc                                                                                <  8:129410/145‑1 (MQ=255)                                                               gCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAAcc                                                                                >  7:129410/1‑145 (MQ=255)                                                                 gcatcagcgccgacggtgaagaggaaatcacctggcgtacatcatgaaacggcaggcttgctcgtttcagtaggaatgggtttaCCCGCCAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTcc                                                                          >  7:228292‑M1/85‑149 (MQ=255)                                                                 cTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTcc                                                                          >  6:314221/1‑149 (MQ=255)                                                                 cTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTc                                                                           >  6:275357/1‑148 (MQ=255)                                                                   atcagcgccgacggtgaagaggaaatcacctggcgtacatcatgaaacggcaggcttgctcgtttctgtaggaatgggtttaCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTa                                                                        >  8:237099‑M1/83‑149 (MQ=255)                                                                    cGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTa                                                                        <  3:23829/148‑1 (MQ=255)                                                                         aGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGaaa                                                                  >  6:342750/1‑149 (MQ=255)                                                                          gggCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAAc                                                                 <  8:319240/149‑1 (MQ=255)                                                                                   aGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCt                                                                                                                 <  5:224910/92‑1 (MQ=255)                                                                                   aGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCt                                                                                                                 >  6:224910/1‑92 (MQ=255)                                                                                     gaggaaatcacctggcgtacatcatgaaacggcaggcttgctcgtttctgtaggaatgggtttaCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTcgc                                                                                         >  8:160864‑M1/65‑114 (MQ=255)                                                                                     gaggaaatcacctggcgtacatcatgaaacggcaggcttgctcgtttctgtaggaatgggtttaCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTcgc                                                                                         <  7:160864‑M1/50‑1 (MQ=255)                                                                                                gAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCatga                                           <  5:275357/149‑1 (MQ=255)                                                                                                  aGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCatgatg                                         <  5:342750/149‑1 (MQ=255)                                                                                                     cGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTa                                       <  5:314221/148‑1 (MQ=255)                                                                                                      gTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACg                                     >  5:43616/1‑149 (MQ=255)                                                                                                        aGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGc                                    >  6:58947/1‑148 (MQ=255)                                                                                                          tGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAg                                 >  3:347255/1‑149 (MQ=255)                                                                                                            ggCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGt                               <  6:285410/149‑1 (MQ=255)                                                                                                             gCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGt                               >  7:187988/1‑148 (MQ=255)                                                                                                              ccTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGa                             >  2:126919/1‑149 (MQ=255)                                                                                                                   gAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGc                                                         >  6:217528/1‑116 (MQ=255)                                                                                                                       ctctGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCctct                     >  3:182868/1‑148 (MQ=255)                                                                                                                        tctGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCtt                    >  4:64808/1‑148 (MQ=255)                                                                                                                         ctGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCa                  >  6:271648/1‑149 (MQ=255)                                                                                                                         ctGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCa                  >  6:255944/1‑149 (MQ=255)                                                                                                                            gTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCg               >  8:43273/1‑149 (MQ=255)                                                                                                                            gTTTAAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCGAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCg               >  6:123943/1‑149 (MQ=255)                                                                                                                              ttCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTc                         <  3:162584/137‑1 (MQ=255)                                                                                                                              ttCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTc                         >  4:162584/1‑137 (MQ=255)                                                                                                                               tCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCatg                                            >  6:270598/1‑117 (MQ=255)                                                                                                                               tCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCatg                                            <  5:270598/117‑1 (MQ=255)                                                                                                                               tCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCg            >  7:221281/1‑149 (MQ=255)                                                                                                                                cAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCg            <  4:347255/148‑1 (MQ=255)                                                                                                                                 aaGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGgc          >  6:270145/1‑149 (MQ=255)                                                                                                                                 aaGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGgc          >  6:158329/1‑149 (MQ=255)                                                                                                                                     cGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTg      <  4:182868/149‑1 (MQ=255)                                                                                                                                         ggAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGc  <  5:270145/149‑1 (MQ=255)                                                                                                                                            gCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCa                                              >  8:110787/1‑102 (MQ=255)                                                                                                                                            gCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCa                                              <  7:110787/102‑1 (MQ=255)                                                                                                                                                gCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCt       <  6:243688/137‑1 (MQ=255)                                                                                                                                                gCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCt       >  5:243688/1‑137 (MQ=255)                                                                                                                                                     |                                                                                                                                         ACTATCGGGCGATCCGCGGTGAGGGGCATCGTACCCTGGTCGAAGGGCAGCGGGTGGAGTACGCCTGCGTGCAGGGCCAGAAAGGCCTGCAAGCCGAAGACGTAGTGGGCCTCTGAGCCTCTGGTTTCAAGCCGTAGGAGCGGGCTTGCCCGCGAAGCAGCCACCACGGTGGCTGCCACGGGCATAGCCCGTATTCGCGGGTAAACCCATTCCTACAGAAACGAGCAAGCCTGCCGTTTCATGATGTACGCCAGGTGATTTCCTCTTCACCGTCGGCGCTGATGC  >  NC_002947/1728491‑1728775

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.