| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1941517 = | 46 (0.870) | 4 (0.080) | 4/240 | NT | 8.5% | coding (59/864 nt) | betX | choline/betaine/carnitine ABC transporter substrate‑binding protein BetX |
| ? | NC_002947 | 1941547 = | 43 (0.860) | coding (89/864 nt) | betX | choline/betaine/carnitine ABC transporter substrate‑binding protein BetX | |||||
CCGTGGCCACGGCCTGCAACTTCACGTCATAGCCGAGTTTTTGCTTGATTACTTCGGCAGCCACGTTGGTGGTCGCCACGCTGTCGGCCCAACCATCCACGTAACCAATGCTTACTTCTTTGGCCAT‑AGC‑CTGTGCAGCGCTCATGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1941666‑1941517‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggccaAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAGCAAAAACTCGGCTATGACGTGAAGTTGCAGGCCGTGGCCACGGGAATCATGTGGCAGGGTGTGGCAACGG > NC_002947/1941547‑1941693 CCGTGGCCACGGCCTGCAACTTCACGTCATAGCCGAGTTTTTGCTTGATTACTTCGGCAGCCACGTTGGTGGTCGCCACGCTGTCGGCCCAACCATCCACGTAACCAATGCTTACTTCTTTGGCCAT‑AGC‑CTGTGCAGCGCTCATGGC > 2:222217/1‑148CCGTGGCCACGGCCTGCAACTTCACGTCATAGCCGAGTTTTTGCTTGATTACTTCGGCAGCCACGTTGGTGGTCGCCACGCTGTCGGCCCAACCATCCACGTAACCAATGCTTACTTCTTTGGCCAT‑AGC‑CTGTGCAGCGCTCATGGC < 8:228912/148‑1CCGTGGCCACGGCCTGCAACTTCACGTCATAGCCGAGTTTTTGCTTGATTACTTCGGCAGCCACGTTGGTGGTCGCCACGCTGTCGGCCCAACCATCCACGTAACCAATGCTTACTTCTTTGGCCAT‑AGC‑CTGTGCAGCGCTCATGGC > 1:150757/1‑148 CGTGGCCACGGCCTGCAACTTCACGTCATAGCCGAGTTTTTGCTTGATTACTTCGGCAGCCACGTTGGTGGTCGCCACGCTGTCGGCCCAACCATCCACGTAACCAATGCTTACTTCTTTGGCCAT‑AGC‑CTGTGCAGCGCTCATGGCCA < 3:190023/149‑1 GCCTGCAACTTCACGTCATAGCCGAGTTTTTGCTTGATTACTTCGGCAGCCACGTTGGTGGTCGCCACGCTGTCGGCCCAACCATCCACGTAACCAATGCTTACTTCTTTGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAG < 8:257394/149‑1 TTCTTTGGCCAT‑AGC‑CTGTGCAGCGCTCATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAGCAAAAACTCGGCTATGACGTGAAGTTGC < 3:236863/140‑1 TTCTTTGGCCAT‑AGC‑CTGTGCAGCGCTCATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAGCAAAAACTCGGCTATGACGTGAAGTTGC > 4:236863/1‑140 TGGCCAT‑AGC‑CTGTGCAGCGCTCATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAGCAAAAACTCGGCTATGACGTGAAGTTGCAGGCCGTGGCCAC < 7:257394/148‑1 ATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAGCAAAAACTCGGCTATGACGTGAAGTTGCAGGCCGTGGCCACGGGAATCATGTGGCAGGGTGTGG > 2:84391/1‑148 GCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAGCAAAAACTCGGCTATGACGTGAAGTTGCAGGCCGTGGCCACGGGAATCATGTGGCAGGGTGT > 8:105205/1‑143 GCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAGCAAAAACTCGGCTATGACGTGAAGTTGCAGGCCGTGGCCACGGGAATCATGTGGCAGGGTGT > 8:100273/1‑143 GCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAGCAAAAACTCGGCTATGACGTGAAGTTGCAGGCCGTGGCCACGGGAATCATGTGGCAGGGTGT < 7:100273/143‑1 GCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAGCAAAAACTCGGCTATGACGTGAAGTTGCAGGCCGTGGCCACGGGAATCATGTGGCAGGGTGT < 7:105205/143‑1 CAAAGAAGTTCGCCTTGGTTACGTGGTTGGTTTGGCCGACAGCGTGGCGACCACGAACGTGGCTGCCGAAGTAATCAAGCAAAAACTCGGCTATGACGTGAAGTTGCAGGCCGTGGGCACGGGAATCA < 6:355554/128‑1 CAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAGCAAAAACTCGGCTATGACGTGAAGTTGCAGGCCGTGGCCACGGGAATCATGTGGCAGGGTGTGGCAACGG > 6:53343/1‑149 CAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAGCAAAAACTCGGCTATGACGTGAAGTTGCAGGCCGTGGCCACGGGAATCATGTGGCAGGGTGTGGCAACGG > 5:248728/1‑149 CAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAGCAAAAACTCGGCTATGACGTGAAGTTGCAGGCCGTGGCCACGG < 2:241692/122‑1 CAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAGCAAAAACTCGGCTATGACGTGAAGTTGCAGGCCGTGGCCACGG > 1:241692/1‑122 CCGTGGCCACGGCCTGCAACTTCACGTCATAGCCGAGTTTTTGCTTGATTACTTCGGCAGCCACGTTGGTGGTCGCCACGCTGTCGGCCCAACCATCCACGTAACCAATGCTTACTTCTTTGGCCAT‑AGC‑CTGTGCAGCGCTCATGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1941666‑1941517‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggccaAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAGCAAAAACTCGGCTATGACGTGAAGTTGCAGGCCGTGGCCACGGGAATCATGTGGCAGGGTGTGGCAACGG > NC_002947/1941547‑1941693 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |