| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1941517 = | 46 (0.870) | 4 (0.080) | 4/240 | NT | 8.5% | coding (59/864 nt) | betX | choline/betaine/carnitine ABC transporter substrate‑binding protein BetX |
| ? | NC_002947 | 1941547 = | 43 (0.860) | coding (89/864 nt) | betX | choline/betaine/carnitine ABC transporter substrate‑binding protein BetX | |||||
ATATGGGGCGGGTGCAGGTCGCAGCTGGATCAGGTCGTCTTGTGTTGCAGGAAGATGATGCAATCTCCAAGACCTGACGAGGGGATGCTTTGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAGCAAAAACTCGGCTATGACGTGAAGTTGCAGGCCGTGGCCACG > NC_002947/1941370‑1941665 | ccgttgccacaccctgccacatgattcccgtggccacggcctgcaacttcacgtcatagccgagtttttgcttgattacttcggcagccacgttggtggtcgccacgctgtcggcccaaccatccacgtaaccaatgcttacttcttTg > 6:53343‑M1/148‑149 (MQ=255)ccgttgccacaccctgccacatgattcccgtggccacggcctgcaacttcacgtcatagccgagtttttgcttgattacttcggcagccacgttggtggtcgccacgctgtcggcccaaccatccacgtaaccaatgcttacttcttTg > 5:248728‑M1/148‑149 (MQ=255)atatGGGGCGGGTGCAGGTCGCAGCTGGATCAGGTCGTCTTGTGTTGCAGGAAGATGATGCAATCTCCAAGACCTGACGAGGGGATGCTTTGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATg < 2:332707/149‑1 (MQ=255) ccacaccctgccacatgattcccgtggccacggcctgcaacttcacgtcatagccgagtttttgcttgattacttcggcagccacgttggtggtcgccacgctgtcggcccaaccatccacgtaaccaatgcttacttcttTGGCCAt > 2:84391‑M1/142‑148 (MQ=255) gCGGGTGCAGGTCGCAGCTGGATCAGGTCGTCTTGTGTTGCAGGAAGATGATGCAATCTCCAAGACCTGACGAGGGGATGCTTTGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGa < 5:361417/149‑1 (MQ=255) acaccctgccacatgattcccgtggccacggcctgcaacttcacgtcatagccgagtttttgcttgattacttcggcagccacgttggtggtcgccacgctgtcggcccaaccatccacgtaaccaatgcttacttcttTGGc < 7:105205‑M1/4‑1 (MQ=255) acaccctgccacatgattcccgtggccacggcctgcaacttcacgtcatagccgagtttttgcttgattacttcggcagccacgttggtggtcgccacgctgtcggcccaaccatccacgtaaccaatgcttacttcttTGGc < 7:100273‑M1/4‑1 (MQ=255) acaccctgccacatgattcccgtggccacggcctgcaacttcacgtcatagccgagtttttgcttgattacttcggcagccacgttggtggtcgccacgctgtcggcccaaccatccacgtaaccaatgcttacttcttTGGc > 8:100273‑M1/140‑143 (MQ=255) acaccctgccacatgattcccgtggccacggcctgcaacttcacgtcatagccgagtttttgcttgattacttcggcagccacgttggtggtcgccacgctgtcggcccaaccatccacgtaaccaatgcttacttcttTGGc > 8:105205‑M1/140‑143 (MQ=255) gggTGCAGGTCGCAGCTGGATCAGGTCGTCTTGTGTTGCAGGAAGATGATGCAATCTCCAAGACCTGACGAGGGGATGCTTTGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAgc < 1:6931/149‑1 (MQ=255) aGGTCGCAGCTGGATCAGGTCGTCTTGTGTTGCAGGAAGATGATGCAATCTCCAAGACCTGACGAGGGGATGCTTTGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGca > 5:69197/1‑149 (MQ=255) tgattcccgtgcccacggcctgcaacttcacgtcatagccgagtttttgcttgattacttcggcagccacgttcgtggtcgccacgctgtcggccaaaccaaccacgtaaccaaggcgaacttcttTg < 6:355554‑M1/2‑1 (MQ=255) gATCAGGTCGTCTTGTGTTGCAGGAAGATGATGCAATCTCCAAGACCTGACGAGGGGATGCTTTGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATgg < 6:113216/147‑1 (MQ=255) ccgtggccacggcctgcaacttcacgtcatagccgagtttttgcttgattacttcggcagccacgttggtggtcgccacgctgtcggcccaaccatccacgtaaccaatgcttacttcttTg < 2:241692‑M1/2‑1 (MQ=255) ccgtggccacggcctgcaacttcacgtcatagccgagtttttgcttgattacttcggcagccacgttggtggtcgccacgctgtcggcccaaccatccacgtaaccaatgcttacttcttTg > 1:241692‑M1/121‑122 (MQ=255) aTCAGGTCGTCTTGTGTTGCAGGAAGATGATGCAATCTCCAAGACCTGACGAGGGGATGCTTTGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCAt > 2:343417/1‑126 (MQ=255) aTCAGGTCGTCTTGTGTTGCAGGAAGATGATGCAATCTCCAAGACCTGACGAGGGGATGCTTTGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCAt < 1:343417/126‑1 (MQ=255) tCAGGTCGTCTTGTGTTGCAGGAAGATGATGCAATCTCCAAGACCTGACGAGGGGATGCTTTGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCa > 5:66656/1‑148 (MQ=255) gtggccacggcctgcaacttcacgtcatagccgagtttttgcttgattacttcggcagccacgttggtggtcgccacgctgtcggcccaaccatccacgtaaccaatgcttacttcttTGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCa < 7:257394‑M1/30‑1 (MQ=255) gtgtTGCAGGAAGATGATGCAATCTCCAAGACCTGACGAGGGGATGCTTTGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAg < 8:40738/146‑1 (MQ=255) gcaacttcacgtcatagccgagtttttgcttgattacttcggcagccacgttggtggtcgccacgctgtcggcccaaccatccacgtaaccaatgcttacttcttTGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAaagaa < 3:236863‑M1/35‑1 (MQ=255) gcaacttcacgtcatagccgagtttttgcttgattacttcggcagccacgttggtggtcgccacgctgtcggcccaaccatccacgtaaccaatgcttacttcttTGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAaagaa > 4:236863‑M1/106‑140 (MQ=255) gCAGGAAGATGATGCAATCTCCAAGACCTGACGAGGGGATGCTTTGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGt > 5:18056/1‑148 (MQ=255) aGGAAGATGATGCAATCTCCAAGACCTGACGAGGGGATGCTTTGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCAt < 3:336175/106‑1 (MQ=255) aGGAAGATGATGCAATCTCCAAGACCTGACGAGGGGATGCTTTGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCAt > 4:336175/1‑106 (MQ=255) gAAGATGATGCAATCTCCAAGACCTGACGAGGGGATGCTTTGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGTTACGt < 6:69197/149‑1 (MQ=255) atgatgCAATCTCCAAGACCTGACGAGGGGATGCTTTGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGTTACGTGGAt < 6:96301/149‑1 (MQ=255) ccAAGACCTGACGAGGGGATGCTTTGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGcac > 6:346414/1‑99 (MQ=255) ccAAGACCTGACGAGGGGATGCTTTGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGcac < 5:346414/99‑1 (MQ=255) ccAAGACCTGACGAGGGGATGCTTTGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGt < 5:158566/118‑1 (MQ=255) ccAAGACCTGACGAGGGGATGCTTTGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGt > 6:158566/1‑118 (MQ=255) cAAGACCTGACGAGGGGATGCTTTGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGa > 1:141404/1‑147 (MQ=255) gACGAGGGGATGCTTTGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGc > 8:111778/1‑148 (MQ=255) ttGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTg < 4:67972/103‑1 (MQ=255) aTGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACAGCACTGGTAATGGCCATGAGCGCTGAACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGAGGCTGc > 3:95138/1‑149 (MQ=255) cAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTg < 8:53455/125‑1 (MQ=255) cAACTTTGAAGAAAATGCGACGGTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTg > 7:53455/1‑125 (MQ=255) aaCTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCATGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGGATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACGAACGTGGCTGCCGAAg > 8:195847/1‑149 (MQ=255) tttGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGc > 7:82665/1‑111 (MQ=255) tttGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGc < 8:82665/111‑1 (MQ=255) gaagaaAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGacc > 6:144104/1‑124 (MQ=255) agaaAATGCGACGTTTCCTGGGCGTGGTCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑TCT‑ATGTACAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCTAAGTAATCaa < 4:95138/148‑1 (MQ=255) agaaAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAg < 6:66656/149‑1 (MQ=255) gaaAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGt < 5:71835/114‑1 (MQ=255) gaaAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGt > 6:71835/1‑114 (MQ=255) tGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAGCaaaaa < 2:141404/149‑1 (MQ=255) tGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAGCaaaa > 7:142642/1‑148 (MQ=255) gACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATc > 5:71812/1‑137 (MQ=255) gACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATc < 6:71812/137‑1 (MQ=255) gACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAGCAAAAACTc > 5:265955/1‑149 (MQ=255) aCGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAGCAAAAACTCg < 7:111778/149‑1 (MQ=255) tttCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGTCAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAGCAAAAACTCGGc > 1:284875/1‑148 (MQ=255) cTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAGCAAAAACTCGGCTATGa > 2:150757/1‑149 (MQ=255) tGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAGCAAAAACTCGGCTATGAc > 1:222217/1‑149 (MQ=255) ggCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAGCAAAAACTCGGCTATGAc < 6:18056/147‑1 (MQ=255) ggCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAGCAAAAACTCGGCTATGAc < 2:284875/147‑1 (MQ=255) gTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAGCAAAAACTCGGCTATGACGTg > 1:174385/1‑147 (MQ=255) cACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGAAAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAGCAAAAACTCGGCTATGACGTGAAGTTg > 8:310376/1‑148 (MQ=255) gCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAaagaag > 8:214436/1‑46 (MQ=255) cttacttcttTGGCCAT‑AGC‑CTGTGCAGCGCTCATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAGCAAAAACTCGGCTATGACGTGAAGTTGCAGGc < 8:257394‑M1/139‑1 (MQ=255) tGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAGCAAAAACTCGGCTATGACGTGAAGTTGCAGGCCGTg > 6:32569/1‑149 (MQ=255) gTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAGCAAAAACTCGGCTATGACGTGAAGTTGCAGGCCGTg < 5:32569/147‑1 (MQ=255) TGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAGCAAAAACTCGGCTATGACGTGAAGTTGCAGGCCGTGGCCACg < 3:190023‑M1/149‑1 (MQ=255) | ATATGGGGCGGGTGCAGGTCGCAGCTGGATCAGGTCGTCTTGTGTTGCAGGAAGATGATGCAATCTCCAAGACCTGACGAGGGGATGCTTTGATGGCAACTTTGAAGAAAATGCGACGTTTCCTGGGCGTGGGCACCGCCCTGGTAATGGCCATGAGCGCTGCACAG‑GCT‑ATGGCCAAAGAAGTAAGCATTGGTTACGTGGATGGTTGGGCCGACAGCGTGGCGACCACCAACGTGGCTGCCGAAGTAATCAAGCAAAAACTCGGCTATGACGTGAAGTTGCAGGCCGTGGCCACG > NC_002947/1941370‑1941665 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |