| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2131993 = | 43 (0.810) | 4 (0.080) | 4/244 | NT | 8.8% | coding (206/2496 nt) | fimD | type I pili subunit FimD |
| ? | NC_002947 | 2132040 = | 42 (0.830) | coding (159/2496 nt) | fimD | type I pili subunit FimD | |||||
GTGCCTGCTGGGTAGCTCCACCTTGCTCTCAGCGCCCTACTCCCAGGCAGACTCCGGGTTCCAGAGCGGCTTCCTGCGCCAAGTGCCTGGCCAACCGCAAGCAGCGAGTGCCTGGTCGCTGAGCATGTTGACCAGCGATCAGGGGCTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2132142‑2131993‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcgcTGCTTGCGGTTGGCCAGGCACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGTGGAGCTACCCAGCAGGCACAGCAATGCG > NC_002947/2132040‑2132151 GTGCCTGCTGGGTAGCTCCACCTTGCTCTCAGCGCCCTACTCCCAGGCAGACTCCGGGTTCCAGCGCGGCTTCCTGCGCCAAGTGCCTGGCCAACCGCAAGCAGCGAGTGCCTGGTCGCTGAGCATGTTGACCAGCGATCAGGGGCTCG > 5:249698/1‑149 TCTCAGCGCCCTACTCCCAGGCAGACTCCGGGTTCCAGAGCGGCTTCCTGCGCCAAGTGCCTGGCCAACCGCAAGCAGCGAGTGCCTGGTCGCTGAGCATGTTGACCAGCGATCAGGGGCTC > 3:28881/1‑122 TCTCAGCGCCCTACTCCCAGGCAGACTCCGGGTTCCAGAGCGGCTTCCTGCGCCAAGTGCCTGGCCAACCGCAAGCAGCGAGTGCCTGGTCGCTGAGCATGTTGACCAGCGATCAGGGGCTC < 4:28881/122‑1 GCAAGCAGCGAGTGCCTGGTCGCTGAGCATGTTGACCAGCGATCAGGGGCTCGCTGCTTGCGGTTGGCCAGGCACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGTGGAGCTACC > 8:127783/1‑147 GAGTGCCTGGTCGCTGAGCATGTTGACCAGCGATCAGGGGCTCGCTGCTTGCGGTTGGCCAGGCACTTGGCGCAGGAAGCCGCTCTGGAACCCGGA < 1:328769/96‑1 GAGTGCCTGGTCGCTGAGCATGTTGACCAGCGATCAGGGGCTCGCTGCTTGCGGTTGGCCAGGCACTTGGCGCAGGAAGCCGCTCTGGAACCCGGA > 2:328769/1‑96 GTCGCTGAGCATGTTGACCAGCGATCAGGGGCTCGCTGCTTGCGGTTGGCCAGGCACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGTGGAGCTACCCAGCAGGCACAGCAATGCG < 7:127783/148‑1 GTGCCTGCTGGGTAGCTCCACCTTGCTCTCAGCGCCCTACTCCCAGGCAGACTCCGGGTTCCAGAGCGGCTTCCTGCGCCAAGTGCCTGGCCAACCGCAAGCAGCGAGTGCCTGGTCGCTGAGCATGTTGACCAGCGATCAGGGGCTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2132142‑2131993‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcgcTGCTTGCGGTTGGCCAGGCACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGTGGAGCTACCCAGCAGGCACAGCAATGCG > NC_002947/2132040‑2132151 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |