New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2131993 =	43 (0.810)	4 (0.080)	4/244	NT	8.8%	coding (206/2496 nt)	fimD	type I pili subunit FimD
	?	NC_002947	2132040 =	42 (0.830)					coding (159/2496 nt)	fimD	type I pili subunit FimD

TGCAGCTCACCGTCCGGGCCTGGCTGGAAATCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGTGGAGCTACCCAGCAGGCACAGCAATGCGCTGCGCTGGCGGC  >  NC_002947/2131900‑2132164                                                                                                                                             |                                                                                                                              ggtagctccaccttgctctcagcgccctactcccaggcagactccgggttccagagcggcttcctgcgccaagtgcctggccaaccgcaagcaGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGc                                                                                                                         >  8:127783‑M1/94‑147 (MQ=255)         aCCGTCCGGGCCTGGCTGGAAATCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAg                                                                                                               >  3:158841/1‑149 (MQ=255)                   ccTGGCTGGAAATCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGgcg                                                                                                    >  2:40876/1‑149 (MQ=255)                    ctggctggAAATCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTg                                                                                                                    <  8:302746/133‑1 (MQ=255)                    ctggctggAAATCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTg                                                                                                                    >  7:302746/1‑133 (MQ=255)                     tggctggAAATCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTCTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGgcg                                                                                                    >  4:34644/1‑147 (MQ=255)                            aaaTCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGcc                                                                                           >  2:282075/1‑149 (MQ=255)                               tCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGct                                                                                        >  2:98964/1‑149 (MQ=255)                                 cAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTg                                                                                                                    >  1:25238/1‑120 (MQ=255)                                 cAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTg                                                                                                                    <  2:25238/120‑1 (MQ=255)                                  aGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTTCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTg                                                                                     <  8:151591/149‑1 (MQ=255)                                       aTGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAAcc                                                                                >  6:293974/1‑149 (MQ=255)                                                ggCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTg                                                                       <  1:40876/149‑1 (MQ=255)                                                     gTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTgg                                                                  <  5:293974/149‑1 (MQ=255)                                                      ttCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTgg                                                                  >  6:291213/1‑148 (MQ=255)                                                       tCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGctc                                                                                       <  5:92853/126‑1 (MQ=255)                                                       tCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGctc                                                                                       >  6:92853/1‑126 (MQ=255)                                                        cAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAg                                                               >  6:357981/1‑149 (MQ=255)                                                         aaGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGa                                                                            <  4:296399/135‑1 (MQ=255)                                                         aaGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGa                                                                            >  3:296399/1‑135 (MQ=255)                                                         aaGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGt                                                              <  5:291213/149‑1 (MQ=255)                                                                        ctctACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTgg                                                                                                      >  6:345066/1‑94 (MQ=255)                                                                        ctctACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTgg                                                                                                      <  5:345066/94‑1 (MQ=255)                                                                        ctctACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCg                                                                              >  2:17301/1‑118 (MQ=255)                                                                           tACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGa                                                                            <  4:294448/117‑1 (MQ=255)                                                                           tACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGa                                                                            >  3:294448/1‑117 (MQ=255)                                                                           tACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCaa                                              <  4:158841/147‑1 (MQ=255)                                                                            aCCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGt                                           >  2:146492/1‑149 (MQ=255)                                                                             cccGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGt                                           <  1:98964/148‑1 (MQ=255)                                                                               cGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGTGGa                                        <  5:357981/149‑1 (MQ=255)                                                                                ggTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGATCCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGTGGAg                                       <  3:34644/149‑1 (MQ=255)                                                                                 gTAGCGGCCAGGCGCGAGCCCCTGATCGCTTGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGCTTATTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGTGGAg                                       <  1:282075/149‑1 (MQ=255)                                                                                  tAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTga                                                    <  6:230587/134‑1 (MQ=255)                                                                                  tAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTga                                                    >  5:230587/1‑134 (MQ=255)                                                                                       gcaagcagcgagtgcctggtcgctgagcatgttgaccagcgatcaggggctcgcTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGTGGAGCTAcc                                  >  8:127783‑M2/55‑147 (MQ=255)                                                                                           ggCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGTGGAGCTACCcagcag                            <  1:146492/149‑1 (MQ=255)                                                                                            gcgcGAGCCCCTGATCGCTGGTCAACATGCTTAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGTGGAGCTACCCAGCAgg                           >  8:179653/1‑149 (MQ=255)                                                                                               CGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCGCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGTGGAGCTACCCAGCAGGcac                        >  5:249698‑M1/1‑149 (MQ=255)                                                                                                gagtgcctggtcgctgagcatgttgaccagcgatcaggggctcgcTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGa                                                                            >  2:328769‑M2/46‑96 (MQ=255)                                                                                                gagtgcctggtcgctgagcatgttgaccagcgatcaggggctcgcTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGa                                                                            <  1:328769‑M2/51‑1 (MQ=255)                                                                                                GAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTgaga                                                  >  3:28881‑M1/1‑122 (MQ=255)                                                                                                GAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTgaga                                                  <  4:28881‑M1/122‑1 (MQ=255)                                                                                                     ccTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGTGGAGCTACCCAGCAGGCACAGCAAt                  >  1:19666/1‑149 (MQ=255)                                                                                                     ccTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGTGGAGCTACCCAGCAGGCACAGCAAt                  <  2:19666/149‑1 (MQ=255)                                                                                                      cTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGTGGAGCTACCCAGCAGGCACAGCAAtg                 >  2:230558/1‑149 (MQ=255)                                                                                                         gtcgctgagcatgttgaccagcgatcaggggctcgcTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGTGGAGCTACCCAGCAGGCACAGCAAtgcg               <  7:127783‑M2/112‑1 (MQ=255)                                                                                                         aTCGCTGGTCCACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTGCGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGTGGAGCTACCCAGCAGGCACAGCAAtgc                <  8:284294/147‑1 (MQ=255)                                                                                                                     cATGCTCAGCGACGAGGCACTCGCTGCTTGCGGTTGGCGAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGTGGAGCTACCCAGCAGGCACAg                      <  5:361448/129‑1 (MQ=255)                                                                                                                     cATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGTGGAGCTACCCAGCAGGCACAGCAATGCGCTGCGCTggcggc  <  1:230558/149‑1 (MQ=255)                                                                                                                     cATGCTCAGCGACCAGGCACTCGCTGCTTGCCGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGTGGAGCTACCCAGCAGGCACAg                      >  6:361448/1‑129 (MQ=255)                                                                                                                                             |                                                                                                                              TGCAGCTCACCGTCCGGGCCTGGCTGGAAATCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGTGGAGCTACCCAGCAGGCACAGCAATGCGCTGCGCTGGCGGC  >  NC_002947/2131900‑2132164

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.