New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2131993 =	43 (0.810)	4 (0.080)	4/244	NT	8.8%	coding (206/2496 nt)	fimD	type I pili subunit FimD
	?	NC_002947	2132040 =	42 (0.830)					coding (159/2496 nt)	fimD	type I pili subunit FimD

CAGTGCGTCCAGGCGCATTCCCCATTCGCCAAGCAGCCTGGCTGGCAGGCATGGCTGCAGCTCACCGTCCGGGCCTGGCTGGAAATCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGTGGAGCTACCCAGCAGG  >  NC_002947/2131845‑2132139                                                                                                                                                     |                                                                                                                                                    cAGTGCGTCCAGGCGCATTCCCCATTCGCCAAGCAGCCTGGCTGGCAGGCATGGCTGCAGCTCACCGTCCGGGCCTGGCTGGAAATCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGgcg                                                                                                                                                     >  6:250035/1‑149 (MQ=255)    tGCGTCCAGGCGCATTCCCCATTCGCCAAGCAGCCTGGCTGGCAGGCATGGCTGCAGCTCACCGTCCGGGCCTGGCTGGAAATCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGa                                                                                                                                                  <  5:251866/149‑1 (MQ=255)    tGCGTCCAGGCGCATTCCCCATTCGCCAAGCAGCCTGGCTGGCAGGCATGGCTGCAGCTCACCGTCCGGGCCTGGCTGGAAATCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGa                                                                                                                                                  <  3:220190/149‑1 (MQ=255)      cGTCCAGGCACATTCCCCATTCGCCAAGCAGCCTGGCTGGCAGGCATGGCTGCAGCTCACCGTCCGGGCCTGGCTGGAAATCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAg                                                                                                                                                 <  6:50280/148‑1 (MQ=255)                    ccccATTCGCCAAGCAGCCTGGCTGGCAGGCATGGCTGCAGCTCACCGTCCGGGCCTGGCTGGAAATCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTgg                                                                                                                                   <  7:182331/148‑1 (MQ=255)                     cccATTCGCCAAGCAGCCTGGCTGGCAGGCATGGCTGCAGCTCACCGTCCGGGCCTGGCTGGAAATCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGt                                                                                                                                  <  8:238344/148‑1 (MQ=255)                            gCCAAGCAGCCTGGCTGGCAGGCATGGCTGCAGCTCACCGTCCGGGCCTGGCTGGAAATCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGa                                                                                                                                                  <  8:104925/125‑1 (MQ=255)                            gCCAAGCAGCCTGGCTGGCAGGCATGGCTGCAGCTCACCGTCCGGGCCTGGCTGGAAATCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGa                                                                                                                                                  >  7:104925/1‑125 (MQ=255)                            gCCAAGCAGCCTGGCTGGCAGGCATGGCTGCAGCTCACCGTCCGGGCCTGGCTGGAAATCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGc                                                                                                                          <  7:186384/149‑1 (MQ=255)                             ccAAGCAGCCTGGCTGGCAGGCATGGCTGCAGCTCACCGTCCGGGCCTGGCTGGAAATCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGc                                                                                                                          >  7:151591/1‑148 (MQ=255)                               aaGCAGCCTGGCTGGCAGGCATGGCTGCAGCTCACCGTCCGGGCCTGGCTGGAAATCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCa                                                                                                                       <  4:13795/149‑1 (MQ=255)                                    gcCTGGCTGGCAGGCATGGCTGCAGCTCACCGTCCGGGCCTGGCTGGAAATCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCg                                                                                                                                       <  8:89057/128‑1 (MQ=255)                                    gcCTGGCTGGCAGGCATGGCTGCAGCTCACCGTCCGGGCCTGGCTGGAAATCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCg                                                                                                                                       >  7:89057/1‑128 (MQ=255)                                     cgcattgctgtgcctgctgggtagctccaccttgctctcagcgccctactcccaggcagactccgggttccagagcggcttcctgcgccaagtgcctggccaaccgcaagcaGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGAc                                                                                                                  <  7:127783‑M1/36‑1 (MQ=255)                                       tggctggcAGGCATGGCTGCAGCTCACCGTCCGGGCCTGGCTGGAAATCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAg                                                                                                               >  7:284294/1‑149 (MQ=255)                                         gctggcAGGCATGGCTGCAGCTCACCGTCCGGGCCTGGCTGGAAATCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAgg                                                                                                              <  6:337244/148‑1 (MQ=255)                                              caggcaTGGCTGCAGCTCACCGTCCGGGCCTGGCTGGAAATCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCg                                                                                                        <  5:250035/149‑1 (MQ=255)                                                        ggtagctccaccttgctctcagcgccctactcccaggcagactccgggttccagagcggcttcctgcgccaagtgcctggccaaccgcaagcaGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGc                                                                                                >  8:127783‑M1/94‑147 (MQ=255)                                                                aCCGTCCGGGCCTGGCTGGAAATCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAg                                                                                      >  3:158841/1‑149 (MQ=255)                                                                          ccTGGCTGGAAATCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGgcg                                                                           >  2:40876/1‑149 (MQ=255)                                                                           ctggctggAAATCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTg                                                                                           >  7:302746/1‑133 (MQ=255)                                                                           ctggctggAAATCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTg                                                                                           <  8:302746/133‑1 (MQ=255)                                                                            tggctggAAATCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTCTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGgcg                                                                           >  4:34644/1‑147 (MQ=255)                                                                                   aaaTCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGcc                                                                  >  2:282075/1‑149 (MQ=255)                                                                                      tCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGct                                                               >  2:98964/1‑149 (MQ=255)                                                                                        cAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTg                                                                                           >  1:25238/1‑120 (MQ=255)                                                                                        cAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTg                                                                                           <  2:25238/120‑1 (MQ=255)                                                                                         aGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTTCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTg                                                            <  8:151591/149‑1 (MQ=255)                                                                                              aTGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAAcc                                                       >  6:293974/1‑149 (MQ=255)                                                                                                  tccgggttccagagcggcttcctgcgccaagtgcctggccaaccgcaagcaGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTc                                                                                                         >  2:328769‑M1/52‑96 (MQ=255)                                                                                                  tccgggttccagagcggcttcctgcgccaagtgcctggccaaccgcaagcaGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTc                                                                                                         <  1:328769‑M1/45‑1 (MQ=255)                                                                                                       ggCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTg                                              <  1:40876/149‑1 (MQ=255)                                                                                                            gTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTgg                                         <  5:293974/149‑1 (MQ=255)                                                                                                             ttCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTgg                                         >  6:291213/1‑148 (MQ=255)                                                                                                              tCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGctc                                                              <  5:92853/126‑1 (MQ=255)                                                                                                              tCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGctc                                                              >  6:92853/1‑126 (MQ=255)                                                                                                               cAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAg                                      >  6:357981/1‑149 (MQ=255)                                                                                                                aaGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGa                                                   <  4:296399/135‑1 (MQ=255)                                                                                                                aaGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGa                                                   >  3:296399/1‑135 (MQ=255)                                                                                                                aaGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGt                                     <  5:291213/149‑1 (MQ=255)                                                                                                                               ctctACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTgg                                                                             >  6:345066/1‑94 (MQ=255)                                                                                                                               ctctACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTgg                                                                             <  5:345066/94‑1 (MQ=255)                                                                                                                               ctctACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCg                                                     >  2:17301/1‑118 (MQ=255)                                                                                                                                  tACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGa                                                   <  4:294448/117‑1 (MQ=255)                                                                                                                                  tACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGa                                                   >  3:294448/1‑117 (MQ=255)                                                                                                                                  tACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCaa                     <  4:158841/147‑1 (MQ=255)                                                                                                                                   aCCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGt                  >  2:146492/1‑149 (MQ=255)                                                                                                                                    cccGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGt                  <  1:98964/148‑1 (MQ=255)                                                                                                                                      cGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGTGGa               <  5:357981/149‑1 (MQ=255)                                                                                                                                       ggTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGATCCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGTGGAg              <  3:34644/149‑1 (MQ=255)                                                                                                                                        gTAGCGGCCAGGCGCGAGCCCCTGATCGCTTGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGCTTATTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGTGGAg              <  1:282075/149‑1 (MQ=255)                                                                                                                                         tAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTga                           >  5:230587/1‑134 (MQ=255)                                                                                                                                         tAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTga                           <  6:230587/134‑1 (MQ=255)                                                                                                                                                  ggCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGTGGAGCTACCcagcag   <  1:146492/149‑1 (MQ=255)                                                                                                                                                   gcgcGAGCCCCTGATCGCTGGTCAACATGCTTAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGTGGAGCTACCCAGCAgg  >  8:179653/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    CAGTGCGTCCAGGCGCATTCCCCATTCGCCAAGCAGCCTGGCTGGCAGGCATGGCTGCAGCTCACCGTCCGGGCCTGGCTGGAAATCCAGCTCATGCTGGCCGGCAGGTTCAAGATTGACCTGTACCTCTACCCGGTAGCGGCCAGGCGCGAGCCCCTGATCGCTGGTCAACATGCTCAGCGACCAGGCACTCGCTGCTTGCGGTTGGCCAGGC‑ACTTGGCGCAGGAAGCCGCTCTGGAACCCGGAGTCTGCCTGGGAGTAGGGCGCTGAGAGCAAGGTGGAGCTACCCAGCAGG  >  NC_002947/2131845‑2132139

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.