New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2359112 =	91 (1.720)	5 (0.100)	4/238	NT	5.6%	coding (70/924 nt)	PP_2074	LysR family transcriptional regulator
	?	NC_002947	2359186 =	84 (1.700)					coding (144/924 nt)	PP_2074	LysR family transcriptional regulator

CTTGATCACCTCTTCGGCCCTGGCCGAGGGCTCCATGCGGTTGCCCACTCGAACCAGCAGCGGGTCGTTGAACATCGCACGCAACCTGGCCAGCGCGGCGCTGACCGTGGGCTGGGCGACGAACAGCTTCTCCGCGGCACGGGTGAGGTTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2359264‑2359112 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggttgcgTGCGATGTTCAACGACCCGCTGCTGGTTCGAGTGGGCAACCGCATGGAGCCCTCGGCCAGGGCCGAAGAGGTGATCAAGTACCTCACGCCAGCCTTGGATGCGATGTCTGTCGCCCTCAGCATGACCCATGATTTCGACCCGCTGAC  >  NC_002947/2359186‑2359332                                                                                                                                                                                                                                                                                                              CTTGATCACCTCTTCGGCCCTGGCCGAGGGCTCCATGCGGTTGCCCACTCGAACCAGCAGCGGGTCGTTGAACATCGCACGCAACCTGGCCAGCGCGGCGCTGACCGTGGGCTGGGCGACGAACAGCTTCTCCGCGGCACGGGTGAGG                                                                                                                                                          <  6:8598/148‑1         CCTCTTCGGCCCTGGCCGAGGGCTCCATGCGGTTGCCCACTCGAACCAGCAGCGGGTCGTTGAACATCGCACGCAACCTGGCCAGCGCGGCGCTGACCGTGGGCTGGGCGACGAACAGCTTCTCCGCGGCACGGGTGAGGTTGC                                                                                                                                                      <  3:4868/144‑1         CCTCTTCGGCCCTGGCCGAGGGCTCCATGCGGTTGCCCACTCGAACCAGCAGCGGGTCGTTGAACATCGCACGCAACCTGGCCAGCGCGGCGCTGACCGTGGGCTGGGCGACGAACAGCTTCTCCGCGGCACGGGTGAGGTTGC                                                                                                                                                      >  4:4868/1‑144               CGGCCCTGGCCGAGGGCTCCATGCGGTTGCCCACTCGAACCAGCAGCGGGTCGTTGAACATCGCACGCAACCTGGCCAGCGCGGCGCTGACCGTGGGCTGGGCGACGAACAGCTTCTCCGCGGCACGGGTGAG                                                                                                                                                           >  8:16285/1‑133               CGGCCCTGGCCGAGGGCTCCATGCGGTTGCCCACTCGAACCAGCAGCGGGTCGTTGAACATCGCACGCAACCTGGCCAGCGCGGCGCTGACCGTGGGCTGGGCGACGAACAGCTTCTCCGCGGCACGGGTGAG                                                                                                                                                           <  7:16285/133‑1                                TCCATGCGGTTGCCCACTCGAACCAGCAGCGGGTCGTTGAACATCGCACGCAACCTGGCCAGCGCGGCGCTGACCGTGGGCTGGGCGACGAACAGCTTCTCCGCGGCACGGGTGA                                                                                                                                                            <  6:265599/115‑1                                TCCATGCGGTTGCCCACTCGAACCAGCAGCGGGTCGTTGAACATCGCACGCAACCTGGCCAGCGCGGCGCTGACCGTGGGCTGGCCGACGAACAGCTTCTCCGCGGCACGGGTGA                                                                                                                                                            >  5:265599/1‑115                                                                    TTGAACATCGCACGCAACCTGGCCAGCGCGGCGCTGACCGTGGGCTGGGCGACGAACAGCTTCTCCGCGGCACGGGTGAG                                                                                                                                                           <  5:26040/80‑1                                                                    TTGAACATCGCACGCAACCTGGCCAGCGCGGCGCTGACCGTGGGCTGGGCGACGAACAGCTTCTCCGCGGCACGGGTGAG                                                                                                                                                           >  6:26040/1‑80                                                                              CACGCAACCTGGCCAGCGCGGCGCTGACCGTGGGCTGGGCGACGAACAGCTTCTCCGCGGCACGGGTGAGGTTGCGTGCGATGTTCAACGACCCGCTGCTGGTTCGAGTGGGCAACCGCATGGAGCCCTCGGCCAGGGCCGAAGAGGT                                                                             >  4:117217/1‑148                                                                               ACGCAACCTGGCCAGCGCGGCGCTGACCGTGGGCTGGGCGACGAACAGCTTCTCCGCGGCACGGGTGAGGTTGCGTGCGATGTTCAACGACCCGCTGGTGGTTCGAGTGGGCAACCGCATGGAGCCCTCGGCCAGGGCCGAAGAGGTGA                                                                           >  7:154386/1‑149                                                                               ACGCAACCTGGCCAGCGCGGCGCTGACCGTGGGCTGGGCGACGAACAGCTACTCCGCGGCACGGGTGAGGTTGCGTGCGATGTTCAACGACCCGCTGCTGGTTCGAGTGGGCAACCGCATGGAGCCCTCGGCCAGGGCCGAAGAGGTGA                                                                           >  1:103520/1‑149                                                                                                     CTGACCGTGGGCTGGGCGACGAACAGCTACTCCGCGGCACGGGTGAGGTTGCGTGCGATGTTCAACGACCCGCTGCTGGTTCGAGTGGGCAACCGCATGGAGCCCTCGGCCAGGGCCGAAGAGGTGATCAAGTACCTCACGCCAGCCTT                                                     <  2:103520/149‑1                                                                                                                                            CGGGTGAGGTTGCGTGCGATGTTCAACGACCCGCTGCTGGTTCGAGTGGGCAACCGCATGGAGCCCTCGGCCAGGGCCGAAGAGGTGATCAAGTACCTCACGCCAGCCTTGGATGCGATGTCTGTCGCCCTCAGCATGACCCATGATTT              <  8:154386/149‑1                                                                                                                                                    GTTGCGTGCGATGTTCAACGACCCGCTGCTGGTTCGAGTGGGCAACCGCATGGAGCCCTCGGCCAGGGCCGAAGAGGTGATCAAGTACCTCACGCCAGCCTTGGATGCGATGTCTGTCGCCCTCAGCATGACCCATGATTTCGACCCGC      >  1:164060/1‑149                                                                                                                                                       GCGTGCGATGTTCAACGACCCGCTGCTGGTTCGAGTGGGCAACCGCATGGAGCCCTCGGCCAGGGCCGAAGAGGTGATCAAGTACCTCACGCCAGCCTTGGATGCGATGTCTGTCGCCCTCAGCATGACCCATGATTTCGACCCGCTGA   >  8:14138/1‑149                                                                                                                                                        CGTGCGATGTTCAACGACCCGCTGCTGGTTCGAGTGGGCAACCGCATGGAGCCCTCGGCCAGGGCCGAAGAGGTGATCAAGTACCTCACGCCAGCCTTGGATGCGATGTCTGTCGCCCTCAGCATGACCCATGATTTCGACCCGCTGAC  <  3:123224/149‑1                                                                                                                                                                                                                                                                                                              CTTGATCACCTCTTCGGCCCTGGCCGAGGGCTCCATGCGGTTGCCCACTCGAACCAGCAGCGGGTCGTTGAACATCGCACGCAACCTGGCCAGCGCGGCGCTGACCGTGGGCTGGGCGACGAACAGCTTCTCCGCGGCACGGGTGAGGTTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2359264‑2359112 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggttgcgTGCGATGTTCAACGACCCGCTGCTGGTTCGAGTGGGCAACCGCATGGAGCCCTCGGCCAGGGCCGAAGAGGTGATCAAGTACCTCACGCCAGCCTTGGATGCGATGTCTGTCGCCCTCAGCATGACCCATGATTTCGACCCGCTGAC  >  NC_002947/2359186‑2359332

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.