New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 2413155NA (NA)10 (0.200) 6/240 NT 100% intergenic (+419/‑2) rlmM/PP_2114 23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
?NC_002947 = 2413186 0 (0.000)coding (30/1302 nt) PP_2114 transposase

TTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGTaatggcc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2413009‑2413155
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTC‑TCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGATGGCCCTTACGGCGGGT  <  NC_002947/2413186‑2413033
                                                                                                                                                                                                                                                                                                                
TTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGTAA                                                                                                                                                           >  6:109867/1‑149
 TTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGTAAT                                                                                                                                                          >  7:305297/1‑149
   TGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGTAATG                                                                                                                                                         <  5:334941/148‑1
   TGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGTAATG                                                                                                                                                         <  2:129220/148‑1
    GTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGTAATGGC                                                                                                                                                       >  6:101284/1‑149
    GTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGTAATGG                                                                                                                                                        <  2:108847/148‑1
     TCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAGGCACC‑‑CGCCAGCGTAATGGC                                                                                                                                                       >  3:165622/1‑148
     TCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGTAATGGC                                                                                                                                                       >  4:185157/1‑148
     TCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGTAATGGC                                                                                                                                                       <  4:115930/148‑1
     TCGAGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGTAATGGC                                                                                                                                                       <  6:70825/148‑1
               CAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGCAATGGCCTGCTCCAAGG                                                                                                                                            >  7:16553/1‑149
                AAAAAGTGACTCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGCAATGGCCTGCTCCAAGG                                                                                                                                            >  7:133185/1‑148
                AAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGTAATG                                                                                                                                                         <  2:226476/135‑1
                               GTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTAC                                                                                                                            <  4:167647/149‑1
                                  AGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGC                                                                                                                          <  8:133185/148‑1
                                   GGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGTAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTG                                                                                                                        <  2:230218/149‑1
                                   GGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTG                                                                                                                        <  8:16553/149‑1
                                     gtCATCCCTTTCAAGGTCTTCGGTAGAATTCGTTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGC                                                                                                                      <  6:112639/147‑1
                                                   GGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGTAATGGCC                                                                                                                                                      >  3:80797/1‑103
                                                   GGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGTAATGGCC                                                                                                                                                      <  4:80797/103‑1
                                                           GTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGTAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGC                                                                                                                          >  8:225533/1‑123
                                                           GTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGTAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGC                                                                                                                          <  7:225533/123‑1
                                                                                          CCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCACTCCGGCGCAATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTG                                                                                                                 <  6:245701/103‑1
                                                                                                                                                     AATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTCTTCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGATGGCCCTTACG        >  1:87514/1‑149
                                                                                                                                                     AATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTC‑TCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGA                   >  5:88854/1‑137
                                                                                                                                                     AATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTC‑TCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGA                   <  6:88854/137‑1
                                                                                                                                                      ATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTC‑TCGAATCTCGCTAGTAGATCAGCCGTCATCGGTCGGGTCTTCCTGACTGGATTTCTGCGAATTCTACCGAAGTCCTTGAAAGGGATGGCCCTTACGtc      <  4:170403/149‑3
                                                                                                                                                      ATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTC‑TCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGATGGCCCTTACGGC      <  3:225130/149‑1
                                                                                                                                                      ATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTC‑TCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGAC                              <  4:94480/125‑1
                                                                                                                                                      ATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTC‑TCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGAC                              >  3:94480/1‑125
                                                                                                                                                      ATGGCCTGCTACAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTC‑TCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGATGTCCCTTACGGC      <  2:274520/149‑1
                                                                                                                                                       TGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTC‑TCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCGTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGATGGCCCTTACGGCG     >  8:285732/1‑149
                                                                                                                                                        GGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTC‑TCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGATGGCCCTTACGGC      >  1:329712/1‑147
                                                                                                                                                         GCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTC‑TCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGATGGCCCTTACGGCGG    <  6:59483/148‑1
                                                                                                                                                         GCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTC‑TCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGATGGCCCTTACGGCGG    >  5:59483/1‑148
                                                                                                                                                         GCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTC‑TCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGATGGCCCTTACGGCGG    <  7:73034/148‑1
                                                                                                                                                          CCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTC‑TCGAATCGTGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGATGGCCCTTA          <  3:18540/141‑1
                                                                                                                                                          CCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTC‑TCGAATCGCGCTAGTACATCAGCCCACATCGCTAGGGTCTTCCTGACTGGATTTCACCCAATTCTACCG                                   >  4:83301/1‑116
                                                                                                                                                          CCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTGTCTTC‑TCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGATGGCCCTTACGGCGGGT  <  2:252745/149‑1
                                                                                                                                                           CTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTC‑TCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGATGGCCCTTACGGCGGGT  >  2:192157/1‑148
                                                                                                                                                           CTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTC‑TCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTT                           <  6:334210/123‑1
                                                                                                                                                           CTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTC‑TCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTT                           >  5:334210/1‑123
                                                                                                                                                           CTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTC‑TCGAATCGCCCTAGTACATCAGCCCACATCGCTCGGGTCATCCTGACTGGATTTCATCGAATTCTACCGAAGACCTTGAAAGGGATGGCCCTTACGGCGGGT  >  5:238689/1‑148
                                                                                                                                                                                                                                                                                                                
TTTTGTCGCGTTTGACAAAAAGTGACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACC‑‑CGCCAGCGTaatggcc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2413009‑2413155
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATGGCCTGCTCCAAGGCAAGTTTGGCCATTACGCTGGCGGGTGCTTTTTTC‑TCGAATCGCGCTAGTACATCAGCCCACATCGCTCGGGTCTTCCTGACTGGATTTCAGCGAATTCTACCGAAGACCTTGAAAGGGATGGCCCTTACGGCGGGT  <  NC_002947/2413186‑2413033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.