| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2413155 | NA (NA) | 10 (0.200) | 6/240 | NT | 100% | intergenic (+419/‑2) | rlmM/PP_2114 | 23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase |
| ? | NC_002947 | = 2413186 | 0 (0.000) | coding (30/1302 nt) | PP_2114 | transposase | |||||
CGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGA‑GAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCCGGAGTGGGTCGATCAGGTTTTCGAGGAGCACCGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGCCATCGCTGCATGCTGCGGCAAGACAACTGGAC > NC_002947/2413039‑2413333 | cgTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATT > 1:87514‑M2/1‑149 (MQ=255) tCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGA‑GAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATT > 5:88854‑M2/1‑137 (MQ=255) tCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGA‑GAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATT < 6:88854‑M2/137‑1 (MQ=255) cACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTgcgccggagtgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgg < 6:245701‑M2/103‑60 (MQ=255) gCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTgcgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcaacgaattctaccgaagaccttgaaagggatgac < 6:112639‑M2/149‑111 (MQ=255) cAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTgcgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggccc < 8:16553‑M2/149‑113 (MQ=255) cAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTacgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggccc < 2:230218‑M2/149‑113 (MQ=255) gCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTgcgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggccct < 8:133185‑M2/148‑114 (MQ=255) gCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTacgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctac > 8:225533‑M2/1‑35 (MQ=255) gCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTacgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctac < 7:225533‑M2/123‑89 (MQ=255) gTAATGGCCAAACTTGCCTTGGAGCAGGCCATTgcgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggcccttac < 4:167647‑M2/149‑117 (MQ=255) ccTTGGAGCAGGCCATTgcgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggcccttacggcgggtcactttttg > 7:16553‑M2/1‑17 (MQ=255) ccTTGGAGCAGGCCATTgcgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggcccttacggcgagtcacttttt > 7:133185‑M2/1‑17 (MQ=255) ggCCATTacgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagacc < 4:80797‑M2/103‑97 (MQ=255) ggCCATTacgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagacc > 3:80797‑M2/1‑7 (MQ=255) gCCATTacgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggcccttacggcgggtcactttttgtcaaactcga < 6:70825‑M2/148‑143 (MQ=255) gCCATTacgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggcccttacggcgggtcactttttgtcaaacgcgac > 6:101284‑M2/1‑6 (MQ=255) gCCATTacgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggcccttacggcgggtcactttttgtcaaacgcga > 4:185157‑M2/1‑6 (MQ=255) gCCATTacgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggcccttacggcgggtcactttttgtcaaacgcga < 4:115930‑M2/148‑143 (MQ=255) gCCATTacgctggcgggtgcctttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggcccttacggcgggtcactttttgtcaaacgcga > 3:165622‑M2/1‑6 (MQ=255) ccATTacgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggcccttacggcgggtcactttttgtcaaacgcgac < 2:108847‑M2/148‑144 (MQ=255) cATTacgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggcccttacggcgggtcactttttgtcaaacgcgaca < 5:334941‑M2/148‑145 (MQ=255) cATTacgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggcccttacggcgggtcactttttgtcaaacgcgaca < 2:129220‑M2/148‑145 (MQ=255) cATTacgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggcccttacggcgggtcacttttt < 2:226476‑M2/135‑132 (MQ=255) aTTacgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggcccttacggcgggtcactttttgtcaaacgcgacaaa > 7:305297‑M2/1‑3 (MQ=255) ttacgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggcccttacggcgggtcactttttgtcaaacgcgacaaaa > 6:109867‑M2/1‑2 (MQ=255) | CGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGA‑GAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCCGGAGTGGGTCGATCAGGTTTTCGAGGAGCACCGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGCCATCGCTGCATGCTGCGGCAAGACAACTGGAC > NC_002947/2413039‑2413333 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |