New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2413155	NA (NA)	10 (0.200)	6/240	NT	100%	intergenic (+419/‑2)	rlmM/PP_2114	23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase
	?	NC_002947	= 2413186	0 (0.000)					coding (30/1302 nt)	PP_2114	transposase

ACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGA‑GAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCCGGAGTGGGTCGATCAGGTTTTCGAGGAGCACCGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGCC  >  NC_002947/2413033‑2413302                                                                                                                            |                                                                                                                                                    aCCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGA‑GAAGACAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGG                                                                                                                           <  2:252745‑M2/149‑1 (MQ=255) aCCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGA‑GAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAG                                                                                                                            >  2:192157‑M2/1‑148 (MQ=255) aCCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGATGAAATCCAGTCAGGATGACCCGAGCGATGTGGGCTGATGTACTAGGGCGATTCGA‑GAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAG                                                                                                                            >  5:238689‑M2/1‑148 (MQ=255)   ccgccgTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGA‑GAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGC                                                                                                                          <  7:73034‑M2/148‑1 (MQ=255)   ccgccgTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGA‑GAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGC                                                                                                                          <  6:59483‑M2/148‑1 (MQ=255)   ccgccgTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGA‑GAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGC                                                                                                                          >  5:59483‑M2/1‑148 (MQ=255)    cgccgTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGACGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGA‑GAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCA                                                                                                                        >  8:285732‑M2/1‑149 (MQ=255)     gccgTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGA‑GAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCAT                                                                                                                       <  3:225130‑M2/149‑1 (MQ=255)     gccgTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGA‑GAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCC                                                                                                                         >  1:329712‑M2/1‑147 (MQ=255)     gccgTAAGGGACATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGA‑GAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGTAGCAGGCCAT                                                                                                                       <  2:274520‑M2/149‑1 (MQ=255)     gacgtaAGGGCCATCCCTTTCAAGGACTTCGGTAGAATTCGCAGAAATCCAGTCAGGAAGACCCGACCGATGACGGCTGATCTACTAGCGAGATTCGA‑GAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCAT                                                                                                                       <  4:170403‑M2/147‑1 (MQ=255)       cgTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATT                                                                                                                      >  1:87514‑M2/1‑149 (MQ=255)         tAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCACGATTCGA‑GAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGG                                                                                                                           <  3:18540‑M2/141‑1 (MQ=255)                  tCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGA‑GAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATT                                                                                                                      >  5:88854‑M2/1‑137 (MQ=255)                  tCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGA‑GAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATT                                                                                                                      <  6:88854‑M2/137‑1 (MQ=255)                          aaGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGA‑GAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAG                                                                                                                            >  5:334210‑M2/1‑123 (MQ=255)                          aaGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGA‑GAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAG                                                                                                                            <  6:334210‑M2/123‑1 (MQ=255)                             gTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGA‑GAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCAT                                                                                                                       <  4:94480‑M2/125‑1 (MQ=255)                             gTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGA‑GAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCAT                                                                                                                       >  3:94480‑M2/1‑125 (MQ=255)                                  cGGTAGAATTGGGTGAAATCCAGTCAGGAAGACCCTAGCGATGTGGGCTGATGTACTAGCGCGATTCGA‑GAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGG                                                                                                                           >  4:83301‑M2/1‑116 (MQ=255)                                                                                                                cACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTgcgccggagtgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgg                                                           <  6:245701‑M2/103‑60 (MQ=255)                                                                                                                     gCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTgcgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcaacgaattctaccgaagaccttgaaagggatgac        <  6:112639‑M2/149‑111 (MQ=255)                                                                                                                       cAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTgcgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggccc      <  8:16553‑M2/149‑113 (MQ=255)                                                                                                                       cAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTacgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggccc      <  2:230218‑M2/149‑113 (MQ=255)                                                                                                                         gCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTgcgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggccct     <  8:133185‑M2/148‑114 (MQ=255)                                                                                                                         gCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTacgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctac                              <  7:225533‑M2/123‑89 (MQ=255)                                                                                                                         gCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTacgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctac                              >  8:225533‑M2/1‑35 (MQ=255)                                                                                                                           gTAATGGCCAAACTTGCCTTGGAGCAGGCCATTgcgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggcccttac  <  4:167647‑M2/149‑117 (MQ=255)                                                                                                                            |                                                                                                                                                    ACCCGCCGTAAGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGA‑GAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCCGGAGTGGGTCGATCAGGTTTTCGAGGAGCACCGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGCC  >  NC_002947/2413033‑2413302

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.