New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2581891	56 (1.060)	4 (0.080)	4/242	NT	6.7%	coding (243/801 nt)	PP_2263	sugar ABC transporter permease
	?	NC_002947	= 2581936	58 (1.150)					coding (288/801 nt)	PP_2263	sugar ABC transporter permease

GCCGAGATCCTTGGCGGCCTGACCCTGTGGCCGCAGGCGTTCACGCTCGACAACTACCGAGTGATCTTCACCGACGCCAGCTGGTACAGCGGCTACATCAACTCGCTGTACTATGTGTGCCTGAACACGCTGATTTCACTGCTCGTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2581742‑2581891 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggcgGTCGCCGAGAAAGCGGTAGCGCGAGAACGCATAGGCCGCGGGCAACGCCACGAGCA  <  NC_002947/2581936‑2581881                                                                                                                                                                                                                GCCGAGATCCTTGGCGGCCTGACCCTGTGGCCGCAGGCGTTCACGCTCGACAACTACCGAGTGATCTTCACCGACGCCAGCTGGTACAGCGGCTACATCAACTCGCTGTACTATGTGTGCCTGAACACGCTGATTTCACTGCTCGTGGC                                                           <  2:322623/149‑1                                                    AACTACCGAGTGATCTTCACCGACGCCAGCTGGTACAGCGGCTACATCAACTCGCTGTACTATGTGTGCCTGAACACGCTGATTTCACTGCTCGTGGCGGTCGCCGAGAAAGCGGTAGCGCGAGAACGCATAGGCCGCGGGCAACGCCA        <  1:53983/149‑1                                                         CCGAGTGATCTTCACCGACGCCAGCTGGTACAGCGGCTACATCAACTCGCTGTACTATGTGTGCCTGAACACGCTGATTTCACTGCTCGTGGCGGTCGCCGAGAAAGCGGTAGCGCGAGAACGCATAGGCCGCGGGCAACGCCACGAG    <  3:152582/148‑1                                                         CCGAGTGATCTTCACCGACGCCAGCTGGTACAGCGGCTACATCAACTCGCTGTACTATGTGTGCCTGAACACGCTGATTTCACTGCTCGTGGCGGTCGCCGAGAAAGCGGTAGCGCGAGAACGCATAGGCCGCGGGCAACGCCACGAG    >  4:152582/1‑148                                                          CGACTGATCATCACCGACGCCAGCAGGTACACCGGCTACATCAACTCGCTGGACTATGTGTGCCTCCACACGCTGATTTCACTGCTCGTGGCGGTCGCCGAGAAAGCGGTAGCGCGAGAACGCATAGGCCGCGGGCAACGCCACGAGCA  <  8:254269/149‑1                                                                                                                                                                                                                GCCGAGATCCTTGGCGGCCTGACCCTGTGGCCGCAGGCGTTCACGCTCGACAACTACCGAGTGATCTTCACCGACGCCAGCTGGTACAGCGGCTACATCAACTCGCTGTACTATGTGTGCCTGAACACGCTGATTTCACTGCTCGTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2581742‑2581891 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggcgGTCGCCGAGAAAGCGGTAGCGCGAGAACGCATAGGCCGCGGGCAACGCCACGAGCA  <  NC_002947/2581936‑2581881

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.