| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2625928 = | 60 (1.140) | 3 (0.060) | 3/238 | NT | 5.2% | intergenic (+106/‑194) | PP_2297/PP_t40 | integrase/tRNA‑His |
| ? | NC_002947 | 2625963 = | 54 (1.090) | intergenic (+141/‑159) | PP_2297/PP_t40 | integrase/tRNA‑His | |||||
TGCGGACGAAGAGACTCGAACTCTTACAGCTTGCGCCGCTGGAACCTAAATCTGGTGCCAGAGCTTGGTCAATTCGCGAAACCCTTTAGATACAAGGGCTTGGCGCGCATCTTACACAGGTGGGACACACTATGCAACGCTAAATTCGTGTCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2626082‑2625928‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgtcccaCCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCTTCGTCCGCACCATGCTTCTGTAAGGTTGTACCGCAA > NC_002947/2625963‑2626109 TGCGGACGAAGAGACTCGAACTCTTACAGCTTGCGCCGCTGGAACCTAAATCTGGTGCCAGAGCTTGGTCAATTCGCGAAACCCTTTAGATACAAGGGCTTGGCGCGCATCTTACACAGGTGGGACACACTATGCAACGCTAAATTCGT < 2:74714/149‑1TGCGGACGAAGAGACTCGAACTCTTACAGCTTGCGCCGCTGGAACCTAAATCTGGTGCCAGAGCTTGGTCAATTCGCGAAACCCTTTAGATACAAGGGCTTGGCGCGCATCTTACACAGGTGGGACACACTATGCAACGCTAAATTCGT < 7:296800/149‑1 CGAAGAGACTCGAACTCTTACAGCTTGCGCCGCTGGAACCTAAATCTGGTGCCAGAGCTTGGTCAATTCGCGAAACCCTTTAGATACAAGGGCTTGGCGCGCATCTTACACAGGTGGGACACACTATGCAACGCTAAATTCGTGTCCC > 2:324473/1‑148 AGGTGGGACACACTATGCAACGCTAAATTCGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGC < 4:326621/124‑1 GTGGGACACACTATGCAACGCTAAATTCGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGAC > 1:74359/1‑89 GTGGGACACACTATGCAACGCTAAATTCGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGAC < 2:74359/89‑1 GTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCTTCGTCCGCACCATGCTTCTGTAAGGTTGT < 4:2467/148‑1 CACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCTTCGTCCGCACCATGCTTCTGTAAGGTTGTACCGCAA < 3:60205/149‑1 TGCGGACGAAGAGACTCGAACTCTTACAGCTTGCGCCGCTGGAACCTAAATCTGGTGCCAGAGCTTGGTCAATTCGCGAAACCCTTTAGATACAAGGGCTTGGCGCGCATCTTACACAGGTGGGACACACTATGCAACGCTAAATTCGTGTCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2626082‑2625928‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgtcccaCCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCTTCGTCCGCACCATGCTTCTGTAAGGTTGTACCGCAA > NC_002947/2625963‑2626109 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |