New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 2625928 =60 (1.140)3 (0.060) 3/238 NT 5.2% intergenic (+106/‑194) PP_2297/PP_t40 integrase/tRNA‑His
?NC_002947 2625963 = 54 (1.090)intergenic (+141/‑159) PP_2297/PP_t40 integrase/tRNA‑His

CCTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCTTCGTCCGCACCATGCTTCTGTAAGGTTGTACCGCAA  >  NC_002947/2625818‑2626109
                                                                                                                                                 |                                                                                                                                                  
ccTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCtg                                                                                                                                                 >  3:278728/1‑149 (MQ=255)
         gACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGAt                                                                                                                                         <  7:154740/148‑1 (MQ=255)
         gACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGCGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGAt                                                                                                                                         >  8:154740/1‑148 (MQ=255)
          acacATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATgc                                                                                                                                       <  3:207474/149‑1 (MQ=255)
            acaTTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATgcgc                                                                                                                                     >  3:92904/1‑149 (MQ=255)
             caTTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCGTAGTGTGTCCCACCTGTGTAAGATgcgcg                                                                                                                                    <  3:293373/149‑1 (MQ=255)
                       ttCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCtt                                                                                                                          <  4:280184/149‑1 (MQ=255)
                       ttCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCtt                                                                                                                          >  5:52646/1‑149 (MQ=255)
                        gccgctggaacctaaatctggtgccagagcttggtcaattcgcgaaaccctttagatacaagggcttggcgcgcatcttacacaggTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCt                                                                                                                                                  <  4:326621‑M1/38‑1 (MQ=255)
                          gTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAg                                                                                                                                           >  8:156233/1‑129 (MQ=255)
                          gTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAg                                                                                                                                           <  7:156233/129‑1 (MQ=255)
                                 gggCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAg                                                                                                                <  6:214092/149‑1 (MQ=255)
                                 gggCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAg                                                                                                                <  3:248530/149‑1 (MQ=255)
                                          aGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTcgc                                                                                                        <  4:278728/148‑1 (MQ=255)
                                              ccTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAAtt                                                                                                   <  6:52646/149‑1 (MQ=255)
                                              ccTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAAtt                                                                                                   >  7:51366/1‑149 (MQ=255)
                                                        gACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGctc                                                                                         >  1:324473/1‑149 (MQ=255)
                                                         gtcaattcgcgaaaccctttagatacaagggcttggcgcgcatcttacacaggTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCAc                                                                                                                                                    <  2:74359‑M1/36‑1 (MQ=255)
                                                         gtcaattcgcgaaaccctttagatacaagggcttggcgcgcatcttacacaggTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCAc                                                                                                                                                    >  1:74359‑M1/54‑89 (MQ=255)
                                                         aCCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGctct                                                                                        <  6:284633/149‑1 (MQ=255)
                                                              gggCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCAc                                                                                   >  1:8122/1‑149 (MQ=255)
                                                                gCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCa                                                                                 <  8:51366/149‑1 (MQ=255)
                                                                  ccacccaAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCAc                                                                                   >  4:109294/1‑145 (MQ=255)
                                                                  ccacccaAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGa                                                                               <  3:109294/149‑1 (MQ=255)
                                                                     cccaCAACTGTGCGGTACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCAcc                                                                                  <  4:34142/143‑1 (MQ=255)
                                                                     cccaAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCAcc                                                                                  >  3:34142/1‑143 (MQ=255)
                                                                        aaaaCGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGTCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGAtt                                                                             >  3:145495/1‑145 (MQ=255)
                                                                          aaCGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGTCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTa                                                                           <  4:145495/145‑1 (MQ=255)
                                                                                gCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAgcg                                                                 >  8:325639/1‑149 (MQ=255)
                                                                                    gACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGTATAGTGTGTCCCACCTGTGTATGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCAcg                                                                                  >  4:111820/1‑127 (MQ=255)
                                                                                     acacacCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAg                                                                                                                <  2:249814/97‑1 (MQ=255)
                                                                                       acacCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGAtt                                                                             <  7:304248/130‑1 (MQ=255)
                                                                                       acacAGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGAtt                                                                             >  8:304248/1‑130 (MQ=255)
                                                                                        cacCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGc                                                         <  7:325639/149‑1 (MQ=255)
                                                                                         acCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATc                                                                                                                     >  8:303875/1‑88 (MQ=255)
                                                                                         acCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATc                                                                                                                     <  7:303875/88‑1 (MQ=255)
                                                                                         acCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCt                                                        >  4:60205/1‑149 (MQ=255)
                                                                                          ccGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATAAGCGCCAAGACCTTGTAt                                                                                                                      >  4:216615/1‑86 (MQ=255)
                                                                                           cGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGt                                                      <  4:92904/149‑1 (MQ=255)
                                                                                                 acaTGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCACGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGt                                                <  5:221992/149‑1 (MQ=255)
                                                                                                 acaTGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGt                                                >  6:221992/1‑149 (MQ=255)
                                                                                                   aTGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTc                                              >  1:18011/1‑149 (MQ=255)
                                                                                                   aTGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTc                                              >  3:2467/1‑149 (MQ=255)
                                                                                                      gggACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCGAGc                                                         >  5:352785/1‑135 (MQ=255)
                                                                                                      gggACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCGAGc                                                         <  6:352785/135‑1 (MQ=255)
                                                                                                      gggACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGa                                            <  2:8122/148‑1 (MQ=255)
                                                                                                       ggACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAAtt                                                                                                   >  2:293068/1‑92 (MQ=255)
                                                                                                       ggACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAAtt                                                                                                   <  1:293068/92‑1 (MQ=255)
                                                                                                       ggACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAg                                                                          <  6:178979/117‑1 (MQ=255)
                                                                                                       ggACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAg                                                                          >  5:178979/1‑117 (MQ=255)
                                                                                                           aggtgggacacactatgcaacgctaaattcgtgtcccaCCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAgcggc                                                               <  4:326621‑M2/86‑1 (MQ=255)
                                                                                                           acTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTc                                              >  3:70041/1‑141 (MQ=255)
                                                                                                           acTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTc                                              <  4:70041/141‑1 (MQ=255)
                                                                                                           acTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTctct                                      >  5:198462/1‑149 (MQ=255)
                                                                                                             gtgggacacactatgcaacgctaaattcgtgtcccaCCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGAc                                                                                                <  2:74359‑M2/53‑1 (MQ=255)
                                                                                                             gtgggacacactatgcaacgctaaattcgtgtcccaCCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGAc                                                                                                >  1:74359‑M2/37‑89 (MQ=255)
                                                                                                               GGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCTTCg                                   >  2:324473‑M1/1‑148 (MQ=255)
                                                                                                                    ACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCTTCGTCCGCa                             <  7:296800‑M1/149‑1 (MQ=255)
                                                                                                                    ACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCTTCGTCCGCa                             <  2:74714‑M1/149‑1 (MQ=255)
                                                                                                                      gAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGtctc                                       <  2:9409/137‑1 (MQ=255)
                                                                                                                      gAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGtctc                                       >  1:9409/1‑137 (MQ=255)
                                                                                                                                ttGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGTTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCAAGCGGCGCAAGCTGTAagagat                                               >  7:100289/1‑117 (MQ=255)
                                                                                                                                ttGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGtt                                               <  8:100289/119‑1 (MQ=255)
                                                                                                                                   cATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCTTCGTCCGCACCATGCTTCTGTAAg              <  1:74714/149‑1 (MQ=255)
                                                                                                                                    aTAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCTTCGTCCGCACCATGCTTCTGTAAgg             >  4:191921/1‑149 (MQ=255)
                                                                                                                                     tAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCTTCGTCCGCACCATGCtt                     <  8:300706/140‑1 (MQ=255)
                                                                                                                                     tAGTGTGTCCCACCAGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCTTCGTCCGCACCATGCtt                     >  7:300706/1‑140 (MQ=255)
                                                                                                                                         gtgtcccaCCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCTTCGTCCGCACCATGCTTCTGTAAGGTTGt         <  4:2467‑M2/140‑1 (MQ=255)
                                                                                                                                               caCCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCTTCGTCCGCACCATGCTTCTGTAAGGTTGTACCGCaa  <  3:60205‑M2/147‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                                  
CCTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCTTCGTCCGCACCATGCTTCTGTAAGGTTGTACCGCAA  >  NC_002947/2625818‑2626109

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.