New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2625928 =	60 (1.140)	3 (0.060)	3/238	NT	5.2%	intergenic (+106/‑194)	PP_2297/PP_t40	integrase/tRNA‑His
	?	NC_002947	2625963 =	54 (1.090)					intergenic (+141/‑159)	PP_2297/PP_t40	integrase/tRNA‑His

GCGCGACACGTTCTTCAACTATGGTGAGGCTACAACGGCCTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCT  >  NC_002947/2625780‑2626073                                                                                                                                                     |                                                                                                                                                  gcgcGACACGTTCTTCAACTATGGTGAGGCTACAACGGCCTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACtt                                                                                                                                                   <  8:175321/149‑1 (MQ=255)  ttgcggtacaaccttacagaagcatggtgcggacgaagagactcgaactcttacagcttgcgccgctggaacctaaatctggtgccagagcttggtcaattcgcgaaaccctttagatacaagggcttggcgcgcatcttacacaggTg                                                                                                                                                  <  3:60205‑M1/2‑1 (MQ=255)   gcgACACGTTCTTCAACTATGGTGAGGCTACAACGGCCTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTgg                                                                                                                                                 <  4:227967/149‑1 (MQ=255)        acGTTCTTCAACTATGGTGAGGCTACAACGGCCTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGTCGACCTTGGGCCCACCCAAAACCGGCCGGGACACACCGGGAAACATGGGGACACTTGGGacac                                                                                                                                            >  8:286453/1‑149 (MQ=255)        acGTTCTTCAACTATGGTGAGGCTACAACGGCCTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGacac                                                                                                                                            >  5:214092/1‑149 (MQ=255)         acaaccttacagaagcatggtgcggacgaagagactcgaactcttacagcttgcgccgctggaacctaaatctggtgccagagcttggtcaattcgcgaaaccctttagatacaagggcttggcgcgcatcttacacaggTGGGacac                                                                                                                                            <  4:2467‑M1/8‑1 (MQ=255)           ttcttcAACTATGGTGAGGCTACAACGGCCTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGaa                                                                                                                                         <  8:110583/149‑1 (MQ=255)                cAACTATGGTGAGGCTACAACGGCCTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTa                                                                                                                                     <  4:127319/148‑1 (MQ=255)                cAACTATGGTGAGGCTACAACGGCATAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGTCGACCGTGGGCACACCCAAAACGTTGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTa                                                                                                                                     <  7:286453/148‑1 (MQ=255)                 aaCTATGGTGAGGCTACAACGGCCTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGc                                                                                                                                   >  4:293373/1‑149 (MQ=255)                 aaCTATGGTGAGGCTACAACGGCCTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGc                                                                                                                                   >  3:280184/1‑149 (MQ=255)                        gTGAGGCTACAACGGCCTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCa                                                                                                                             <  8:178983/148‑1 (MQ=255)                             gCTACAACGGCCTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTg                                                                                                                                                  <  3:168594/122‑1 (MQ=255)                             gCTACAACGGCCTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTg                                                                                                                                                  >  4:168594/1‑122 (MQ=255)                             gCTACAACGGCCTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAgtgt                                                                                                                       >  4:207474/1‑149 (MQ=255)                                aCAACGGCCTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACAGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTc                                                                                                                    >  5:284633/1‑149 (MQ=255)                                       ccTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCtg                                                                                                             >  3:278728/1‑149 (MQ=255)                                                gACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGAt                                                                                                     <  7:154740/148‑1 (MQ=255)                                                gACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGCGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGAt                                                                                                     >  8:154740/1‑148 (MQ=255)                                                 acacATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATgc                                                                                                   <  3:207474/149‑1 (MQ=255)                                                   acaTTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATgcgc                                                                                                 >  3:92904/1‑149 (MQ=255)                                                    caTTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCGTAGTGTGTCCCACCTGTGTAAGATgcgcg                                                                                                <  3:293373/149‑1 (MQ=255)                                                      atttCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATa                                                                                                                           <  6:28364/119‑1 (MQ=255)                                                      atttCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATa                                                                                                                           >  5:28364/2‑120 (MQ=255)                                                              ttCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCtt                                                                                      >  5:52646/1‑149 (MQ=255)                                                              ttCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCtt                                                                                      <  4:280184/149‑1 (MQ=255)                                                               gccgctggaacctaaatctggtgccagagcttggtcaattcgcgaaaccctttagatacaagggcttggcgcgcatcttacacaggTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCt                                                                                                              <  4:326621‑M1/38‑1 (MQ=255)                                                                 gTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAg                                                                                                       >  8:156233/1‑129 (MQ=255)                                                                 gTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAg                                                                                                       <  7:156233/129‑1 (MQ=255)                                                                        gggCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAg                                                                            <  3:248530/149‑1 (MQ=255)                                                                        gggCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAg                                                                            <  6:214092/149‑1 (MQ=255)                                                                          gCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTa                                                                                                                                     >  6:36101/1‑90 (MQ=255)                                                                                 aGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTcgc                                                                    <  4:278728/148‑1 (MQ=255)                                                                                     ccTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAAtt                                                               <  6:52646/149‑1 (MQ=255)                                                                                     ccTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAAtt                                                               >  7:51366/1‑149 (MQ=255)                                                                                               gACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGctc                                                     >  1:324473/1‑149 (MQ=255)                                                                                                gtcaattcgcgaaaccctttagatacaagggcttggcgcgcatcttacacaggTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCAc                                                                                                                >  1:74359‑M1/54‑89 (MQ=255)                                                                                                gtcaattcgcgaaaccctttagatacaagggcttggcgcgcatcttacacaggTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCAc                                                                                                                <  2:74359‑M1/36‑1 (MQ=255)                                                                                                aCCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGctct                                                    <  6:284633/149‑1 (MQ=255)                                                                                                     gggCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCAc                                               >  1:8122/1‑149 (MQ=255)                                                                                                       gCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCa                                             <  8:51366/149‑1 (MQ=255)                                                                                                         ccacccaAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCAc                                               >  4:109294/1‑145 (MQ=255)                                                                                                         ccacccaAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGa                                           <  3:109294/149‑1 (MQ=255)                                                                                                            cccaCAACTGTGCGGTACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCAcc                                              <  4:34142/143‑1 (MQ=255)                                                                                                            cccaAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCAcc                                              >  3:34142/1‑143 (MQ=255)                                                                                                               aaaaCGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGTCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGAtt                                         >  3:145495/1‑145 (MQ=255)                                                                                                                 aaCGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGTCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTa                                       <  4:145495/145‑1 (MQ=255)                                                                                                                       gCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAgcg                             >  8:325639/1‑149 (MQ=255)                                                                                                                           gACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGTATAGTGTGTCCCACCTGTGTATGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCAcg                                              >  4:111820/1‑127 (MQ=255)                                                                                                                            acacacCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAg                                                                            <  2:249814/97‑1 (MQ=255)                                                                                                                              acacCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGAtt                                         <  7:304248/130‑1 (MQ=255)                                                                                                                              acacAGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGAtt                                         >  8:304248/1‑130 (MQ=255)                                                                                                                               cacCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGc                     <  7:325639/149‑1 (MQ=255)                                                                                                                                acCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATc                                                                                 <  7:303875/88‑1 (MQ=255)                                                                                                                                acCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATc                                                                                 >  8:303875/1‑88 (MQ=255)                                                                                                                                acCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCt                    >  4:60205/1‑149 (MQ=255)                                                                                                                                 ccGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATAAGCGCCAAGACCTTGTAt                                                                                  >  4:216615/1‑86 (MQ=255)                                                                                                                                  cGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGt                  <  4:92904/149‑1 (MQ=255)                                                                                                                                        acaTGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCACGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGt            <  5:221992/149‑1 (MQ=255)                                                                                                                                        acaTGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGt            >  6:221992/1‑149 (MQ=255)                                                                                                                                          aTGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTc          >  1:18011/1‑149 (MQ=255)                                                                                                                                          aTGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTc          >  3:2467/1‑149 (MQ=255)                                                                                                                                             gggACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCGAGc                     <  6:352785/135‑1 (MQ=255)                                                                                                                                             gggACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCGAGc                     >  5:352785/1‑135 (MQ=255)                                                                                                                                             gggACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGa        <  2:8122/148‑1 (MQ=255)                                                                                                                                              ggACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAAtt                                                               >  2:293068/1‑92 (MQ=255)                                                                                                                                              ggACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAAtt                                                               <  1:293068/92‑1 (MQ=255)                                                                                                                                              ggACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAg                                      <  6:178979/117‑1 (MQ=255)                                                                                                                                              ggACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAg                                      >  5:178979/1‑117 (MQ=255)                                                                                                                                                  acTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTc          <  4:70041/141‑1 (MQ=255)                                                                                                                                                  acTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTc          >  3:70041/1‑141 (MQ=255)                                                                                                                                                  acTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTctct  >  5:198462/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                  GCGCGACACGTTCTTCAACTATGGTGAGGCTACAACGGCCTAGTTGGGACACATTTTCTGATTCGTGGCTCGGGCAGAGTAGGCCCTGAGCGGCGACCGTGGGCCCACCCAAAACGGGGCGGGACACACCGGGACACATGGGGACACTTGGGACACGAATTTAGCGTTGCATAGTGTGTCCCACCTGTGTAAGATGCGCGCCAAGCCCTTGTATCTAAAGGGTTTCGCGAATTGACCAAGCTCTGGCACCAGATTTAGGTTCCAGCGGCGCAAGCTGTAAGAGTTCGAGTCTCT  >  NC_002947/2625780‑2626073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.