New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2693988	34 (0.640)	4 (0.080)	4/238	NT	11.5%	coding (279/2394 nt)	PP_2362	usher protein
	?	NC_002947	= 2694043	30 (0.610)					coding (334/2394 nt)	PP_2362	usher protein

TTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2693839‑2693988 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcagccCCGCGATGCTGTCCAGGGCCACCTCCCCCTGGGGGTTGCCCGGCAGCGAGACGCCGGCTGCACGCAATACGTCGCTGTCCAGGTACAACCGCCCGGCCCGCTGCTGCACCGGTATCAGGTCAACCCTGGGCATCTGGTTCACCA  <  NC_002947/2694043‑2693900                                                                                                                                                                                                                                                                                                        TTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGC                                                                                                                                                   >  2:120564/1‑149      CCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCC                                                                                                                                                  <  3:109497/145‑1      CCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCC                                                                                                                                                  >  4:109497/1‑145                                TCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATCCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGAATTGCGTG                                                                                                                                                       >  3:191850/1‑114                                          CACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCCCGCGATGCTGTCCAGGGCCACCTCCCCCTGGGGGTTGCC                                                                                                          >  4:231444/1‑149                                                     TCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCCCGCGATGCTGTCCAGGGCCACCTCCCCCTGGGGGTTGCCCGGCAGCGAGA                                                                                               >  5:151343/1‑149                                                             GTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCCCGCGATGCTGTCCAGGGCCACCTCCCCCTGGGGGTTGCCCGGCAGCGAGACGCCGG                                                                                         <  6:151343/147‑1                                                                GTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCCCGCGATGCTGTCCAGGGCCACCTCCCCCTGGGGGTTGCCCGGCAGCGAGACGCCGGCTGCA                                                                                    <  3:231444/149‑1                                                                                                                                                  CAGCCCCGCGATGCTGTCCAGGGCCACCTCCCCCTGGGGGTTGCCCGGCATCGAGACGCCGGCTGCACGCAATACGTCGCTGTCCAGGTACAACCGCCAGGCCCGCTGCTGCACCGGTATCAGGTCAACCCTGGGCATCTGGTTCACCA  >  6:349351/1‑149                                                                                                                                                  CAGCCCCGCGATGCTGTCCAGGGCCACCTCCCCCTGGGGGTTGCCCGGCAGCGAGACGCCGGCTGCACGCAATACGTCGCTGTCCAGGTACACCCGCCCGGCCCGCTGCTGCACCGGTATCAGGTCAACCCTGGGCATCTGGTTCACCA  >  4:219593/1‑149                                                                                                                                                                                                                                                                                                        TTGCCCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2693839‑2693988 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcagccCCGCGATGCTGTCCAGGGCCACCTCCCCCTGGGGGTTGCCCGGCAGCGAGACGCCGGCTGCACGCAATACGTCGCTGTCCAGGTACAACCGCCCGGCCCGCTGCTGCACCGGTATCAGGTCAACCCTGGGCATCTGGTTCACCA  <  NC_002947/2694043‑2693900

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.