New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2693988	34 (0.640)	4 (0.080)	4/238	NT	11.5%	coding (279/2394 nt)	PP_2362	usher protein
	?	NC_002947	= 2694043	30 (0.610)					coding (334/2394 nt)	PP_2362	usher protein

CCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAACAGCAAGTGGGTGATCGCAACCTTTACCCGGCCAGCGATGCGCGCAGCAGTTTCGGCGCCTTGTTCAACTACGA  >  NC_002947/2693895‑2694188                                                                                                                                                     |                                                                                                                                                  ccTGGTGGTGAACCAGATGCCCAGGGCTCACCTGATACCGGTTCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCgg                                                                                                                                                   <  8:195966/149‑1 (MQ=255)      tggtgAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCTGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGATGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGggctg                                                                                                                                              >  6:349351‑M2/1‑144 (MQ=255)      tggtgAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGGTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGggctg                                                                                                                                              >  4:219593‑M2/1‑144 (MQ=255)           aaCCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCacac                                                                                                                                         >  2:261146/1‑149 (MQ=255)                gATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGAc                                                                                                                                     >  4:3285/1‑148 (MQ=255)                           ttGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAg                                                                                                                         <  3:3285/149‑1 (MQ=255)                                   aTACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAg                                                                                                                   <  1:40475/147‑1 (MQ=255)                                          tGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGa                                                                                                                                <  5:155332/127‑1 (MQ=255)                                          tGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGa                                                                                                                                >  6:155332/1‑127 (MQ=255)                                            cagcagCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCctgctgct                                                                                                        <  7:205124/149‑1 (MQ=255)                                                    ggccgggcGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGTCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTgc                                                                                                >  2:287878/1‑149 (MQ=255)                                                                gTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGt                                                                                    >  6:355417/1‑149 (MQ=255)                                                                       gACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCa                                                                               <  1:261146/147‑1 (MQ=255)                                                                                   ttGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCt                                                                                       >  4:59650/1‑127 (MQ=255)                                                                                        tGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGggctgcacgcaatacgtcgctgtccaggtacaaccgcccggcccgctgctgcaccggtatcaggtcaaccctgggcatctggttcac                                                            <  3:231444‑M2/149‑88 (MQ=255)                                                                                        tGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGaa                                                                            >  5:69035/1‑133 (MQ=255)                                                                                        tGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGaa                                                                            <  6:69035/133‑1 (MQ=255)                                                                                             ccGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGggctgcacgcaatacgtcgctgtccaggtacaaccgcccggcccgctgctgcaccggtatcaggtcaaccctgggcatctggttcaccac                                                         <  6:151343‑M2/147‑91 (MQ=255)                                                                                             ccGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAACAGCAAGTg                                                                   <  7:305484/137‑1 (MQ=255)                                                                                             ccGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAACAGCAAGTg                                                                   >  8:305484/1‑137 (MQ=255)                                                                                              cGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAAc                                                                           >  8:80761/1‑128 (MQ=255)                                                                                              cGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAAc                                                                           <  7:80761/128‑1 (MQ=255)                                                                                               ggCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAACAGCAAGTGGGTGATCGCAACCt                                                     <  5:355417/149‑1 (MQ=255)                                                                                                   tctcGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGggctgcacgcaatacgtcgctgtccaggtacaaccgcccggcccgctgctgcaccggtatcaggtcaaccctgggcatctggttcaccaccaggtcga                                                 >  5:151343‑M2/1‑51 (MQ=255)                                                                                                     tcGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCCCACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAACAGCAAGTGGGTGATCGCAACCTTTAccc                                               >  5:198984/1‑149 (MQ=255)                                                                                                     tcGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAACAGCAAGTGGGTTATCGCAACCTTTAccc                                               >  4:185474/1‑149 (MQ=255)                                                                                                      cGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGaa                                                                            <  5:361945/119‑1 (MQ=255)                                                                                                      cGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGaa                                                                            >  6:361945/1‑119 (MQ=255)                                                                                                       gCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAACAGCAAGTGGGTGATCGCAACCTTTACCCgg                                             >  5:219542/1‑149 (MQ=255)                                                                                                              ggCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGggctgcacgcaatacgtcgctgtccaggtacaaccgcccggcccgctgctgcaccggtatcaggtcaaccctgggcatctggttcaccaccaggtcgaggtaaagggtg                                      >  4:231444‑M2/1‑40 (MQ=255)                                                                                                                cAACCACCAGGGGGAGGAGGCCCTGGACATCATCCCGCGGCTCCACACCCACTACGACACTCAGAACCAGCACCTGCTGCTGCAGGAGCCGCCAGCCACGTTTCCAGAACAGCAAGTCGGTGATCGCAACCTTTACCCCGCCACCCATg                                    >  4:127334/1‑149 (MQ=255)                                                                                                                    ccccAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAACAGCAAGTGGGTGATCGCAACCTTTACCCGGCCAGCGATgcgcg                                >  5:59690/1‑149 (MQ=255)                                                                                                                    ccccAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAACAGCAAGTGGGTGATCGCAACCTTTACCCGGCCAGCGATgcgcg                                >  1:344160/1‑149 (MQ=255)                                                                                                                        aGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAACAGCAAGTGGGTGATCGCAACCTTTACCCGGCCAGCGATGCGCgcag                             >  8:217430/1‑148 (MQ=255)                                                                                                                                     ccTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAACAGCAAGTGGGTGATCGCAACCTTTACCCGGCCAGCGATGCGCGCAGCAGTTTCGGCGCCt               >  2:298586/1‑149 (MQ=255)                                                                                                                                          aCAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAACAGCAAGTGGGTGATCGCAACCTTTACCCGGCCAGCGATGCGCGCAGCAGTTTCGGCGCCTTGTTc          <  6:59690/149‑1 (MQ=255)                                                                                                                                              cATCGCGGGTCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAACAGCAAGTGGGTGATCGCAACCTTTACCCGGCCAGCGATGCGCGCAGCAGTTTCGGCGCCTTGTTCAACt      <  3:127334/149‑1 (MQ=255)                                                                                                                                                tCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAACAGCAAGTGGGTGATCGCAACCTTTACCCGGCCAGCGATGCGCGCAGCAGTTTCGGCGCCTTGTTCAACTAc    <  7:217430/149‑1 (MQ=255)                                                                                                                                                  gcgGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAACAGCAAGTGGGTGATCGCAACCTTTACCCGGCCAGCGATGCGCGCAGCAGTTTCGGCGCCTTGTTCAACTACGa  >  3:150548/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                  CCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAACAGCAAGTGGGTGATCGCAACCTTTACCCGGCCAGCGATGCGCGCAGCAGTTTCGGCGCCTTGTTCAACTACGA  >  NC_002947/2693895‑2694188

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.