New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2693988	34 (0.640)	4 (0.080)	4/238	NT	11.5%	coding (279/2394 nt)	PP_2362	usher protein
	?	NC_002947	= 2694043	30 (0.610)					coding (334/2394 nt)	PP_2362	usher protein

CCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAACAGCAAGTGGGTGATCGCA  >  NC_002947/2693843‑2694133                                                                                                                                                  |                                                                                                                                                  ccccACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGc                                                                                                                                                >  5:192059/1‑149 (MQ=255)  cccACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCC                                                                                                                                                   <  3:109497‑M1/145‑1 (MQ=255)  cccACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCC                                                                                                                                                   >  4:109497‑M1/1‑145 (MQ=255)   ccACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGt                                                                                                                                              >  5:351063/1‑149 (MQ=255)     aCCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGtct                                                                                                                                            <  2:40092/149‑1 (MQ=255)            aCGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGcc                                                                                                                                     >  8:205124/1‑149 (MQ=255)              ggAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCgg                                                                                                                                   <  2:74463/149‑1 (MQ=255)                  aTGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCaa                                                                                                                               <  6:351063/149‑1 (MQ=255)                      ccGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAAcccc                                                                                                                           >  2:40475/1‑149 (MQ=255)                            tCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAggg                                                                                                                      <  6:21861/148‑1 (MQ=255)                            tCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAggg                                                                                                                      >  5:21861/1‑148 (MQ=255)                                     ccACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTAGCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGcc                                                                                                            <  6:192059/149‑1 (MQ=255)                                      cACCCTTTACCTCGACCTGGTGGTGAACCAGATGCTCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCg                                                                                                                                    <  6:310686/124‑1 (MQ=255)                                      cACCCTTTACCTCGACCTGGTGGTGAACCAGATGCTCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCg                                                                                                                                    >  5:310686/1‑124 (MQ=255)                                      cACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCccgcgatgctgtccagggccacctccccctgggggttgcc                                                                                                           >  4:231444‑M1/1‑109 (MQ=255)                                          cTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCGCCAGGGGGAGGTGGCCCTGGa                                                                                                       <  7:187357/149‑1 (MQ=255)                                          cTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGa                                                                                                       >  5:349351/1‑149 (MQ=255)                                               ccTTGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACa                                                                                                     >  8:226482/1‑146 (MQ=255)                                               ccTTGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACa                                                                                                     <  7:226482/146‑1 (MQ=255)                                               ccTCGACCTGGTGGTTAACCAGAGGCCCAGGGTTGACGTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGAACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCGGGGCAACCCCCAGGGGGAGGTGGCCCTGGACa                                                                                                     <  5:230154/146‑1 (MQ=255)                                               ccTCGACCTGGAGGTGAACCAGATGCCCAGCGTTGACCAGATACAGGTGCAGCAGCGGGCCGGGCGGTTGTACCAGGACAGCGCCGAATTGCGTGCAGCCCGCGTCTCGCTGCCGCGCAACCCCCACGTGGAGGAGGCCCTGGACa                                                                                                     >  6:230154/1‑146 (MQ=255)                                                 tCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCccgcgatgctgtccagggccacctccccctgggggttgcccggcagcgaga                                                                                                >  5:151343‑M1/1‑98 (MQ=255)                                                     ccTGGTGGTGAACCAGATGCCCAGGGCTCACCTGATACCGGTTCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCgg                                                                                            <  8:195966/149‑1 (MQ=255)                                                         gtggtgAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCccgcgatgctgtccagggccacctccccctgggggttgcccggcagcgagacgccgg                                                                                          <  6:151343‑M1/147‑58 (MQ=255)                                                          tggtgAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCTGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGATGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGggctg                                                                                       >  6:349351‑M2/1‑144 (MQ=255)                                                          tggtgAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGGTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGggctg                                                                                       >  4:219593‑M2/1‑144 (MQ=255)                                                            gtgAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCccgcgatgctgtccagggccacctccccctgggggttgcccggcagcgagacgccggctgca                                                                                     <  3:231444‑M1/149‑63 (MQ=255)                                                            gtgAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTgg                                                                                                        >  7:209431/1‑130 (MQ=255)                                                            gtgAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTgg                                                                                                        <  8:209431/130‑1 (MQ=255)                                                               aaCCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCacac                                                                                  >  2:261146/1‑149 (MQ=255)                                                                    gATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGAc                                                                              >  4:3285/1‑148 (MQ=255)                                                                          cAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAAccc                                                                                                                            <  4:166486/96‑1 (MQ=255)                                                                          cAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAAccc                                                                                                                            >  3:166486/1‑96 (MQ=255)                                                                               ttGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAg                                                                  <  3:3285/149‑1 (MQ=255)                                                                                       aTACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAg                                                            <  1:40475/147‑1 (MQ=255)                                                                                              tGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGa                                                                         >  6:155332/1‑127 (MQ=255)                                                                                              tGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGa                                                                         <  5:155332/127‑1 (MQ=255)                                                                                                cagcagCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCctgctgct                                                 <  7:205124/149‑1 (MQ=255)                                                                                                        ggccgggcGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGTCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTgc                                         >  2:287878/1‑149 (MQ=255)                                                                                                                    gTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGt                             >  6:355417/1‑149 (MQ=255)                                                                                                                           gACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCa                        <  1:261146/147‑1 (MQ=255)                                                                                                                                       ttGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCt                                >  4:59650/1‑127 (MQ=255)                                                                                                                                            tGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGggctgcacgcaatacgtcgctgtccaggtacaaccgcccggcccgctgctgcaccggtatcaggtcaaccctgggcatctggttcac     <  3:231444‑M2/149‑88 (MQ=255)                                                                                                                                            tGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGaa                     >  5:69035/1‑133 (MQ=255)                                                                                                                                            tGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGaa                     <  6:69035/133‑1 (MQ=255)                                                                                                                                              cAGCCccgcgatgctgtccagggccacctccccctgggggttgcccggcatcgagacgccggctgcacgcaatacgtcgctgtccaggtacaaccgccaggcccgctgctgcaccggtatcaggtcaaccctgggcatctggttcacca   >  6:349351‑M1/1‑5 (MQ=255)                                                                                                                                              cAGCCccgcgatgctgtccagggccacctccccctgggggttgcccggcagcgagacgccggctgcacgcaatacgtcgctgtccaggtacacccgcccggcccgctgctgcaccggtatcaggtcaaccctgggcatctggttcacca   >  4:219593‑M1/1‑5 (MQ=255)                                                                                                                                                 ccGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGggctgcacgcaatacgtcgctgtccaggtacaaccgcccggcccgctgctgcaccggtatcaggtcaaccctgggcatctggttcaccac  <  6:151343‑M2/147‑91 (MQ=255)                                                                                                                                                 ccGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAACAGCAAGTg            <  7:305484/137‑1 (MQ=255)                                                                                                                                                 ccGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAACAGCAAGTg            >  8:305484/1‑137 (MQ=255)                                                                                                                                                  cGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAAc                    <  7:80761/128‑1 (MQ=255)                                                                                                                                                  cGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAAc                    >  8:80761/1‑128 (MQ=255)                                                                                                                                                  |                                                                                                                                                  CCCCACCGCCCACGGAGATGTCCGCCATCGCCGAGGCCACCCTTTACCTCGACCTGGTGGTGAACCAGATGCCCAGGGTTGACCTGATACCGGTGCAGCAGCGGGCCGGGCGGTTGTACCTGGACAGCGACGTATTGCGTGCAGCCGGCGTCTCGCTGCCGGGCAACCCCCAGGGGGAGGTGGCCCTGGACAGCATCGCGGGGCTGCACACCGACTACGACAGTCAGAACCAGCGCCTGCTGCTGCAGGTGCCGCCAGCCTGGTTGCCAGAACAGCAAGTGGGTGATCGCA  >  NC_002947/2693843‑2694133

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.