New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3077546 = | 34 (0.640) | 3 (0.060) | 3/242 | NT | 9.5% | coding (307/951 nt) | PP_2687 | hypothetical protein |
? | NC_002947 | 3077581 = | 25 (0.500) | coding (272/951 nt) | PP_2687 | hypothetical protein |
GGCCTCGGGCATGCTGGATGACTACCTGCGTCGCCACAAGGAACTCGACACCGAGCGCATGCTGCACTTCTTCGCCCTCGACGCCACCAACCCCAGCAGCATCTACTGCTGCCTGCAGGCCGCCAGGACCAATGCCCATGCAGTGCGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3077697‑3077546 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggccTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGG > NC_002947/3077581‑3077724 GGCGTCTGGCATGCTGGATGAGTACCTGCTTCGCCACATGGATCTCGACACCGAGCGCATGCTGCACTTCTTCGCCCTCGACGCCACCTACCCAAGCAGCATCTACTGCTGCCTGCAGGCCGCCAGGACCAATGCCCATGCAGTGCGC < 8:63068/148‑1 CTGCAGGCCGCCAGGACCAATGCCCATGCAGTGCGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTG > 7:301747/1‑123 CTGCAGGCCGCCAGGACCAATGCCCATGCAGTGCGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTG < 8:301747/123‑1 TGCAGGCCGCCAGGACCAATGCCCATGCAGTGCGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCC > 7:273731/1‑149 CGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGG < 3:168128/149‑1 CGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGG > 5:86576/1‑149 GGCCTCGGGCATGCTGGATGACTACCTGCGTCGCCACAAGGAACTCGACACCGAGCGCATGCTGCACTTCTTCGCCCTCGACGCCACCAACCCCAGCAGCATCTACTGCTGCCTGCAGGCCGCCAGGACCAATGCCCATGCAGTGCGCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3077697‑3077546 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggccTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGG > NC_002947/3077581‑3077724 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |