New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3077546 =	34 (0.640)	3 (0.060)	3/242	NT	9.5%	coding (307/951 nt)	PP_2687	hypothetical protein
	?	NC_002947	3077581 =	25 (0.500)					coding (272/951 nt)	PP_2687	hypothetical protein

GGTCGCACCGCGGAACAGGTGTGATCGTTCCTTGACCCAGTCGCAGAACTGGCTGATGCCATAGCGACCCAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCC  >  NC_002947/3077403‑3077691                                                                                                                                                 |                                                                                                                                                  ccatgccgaactggcaatgtcgctgatggcctcgggcatgctggatgactacctgcgtcgccacaaggaactcgacaccgagcgcatgctgcacttcttcgccctcgacgccaccaaccccagcagcatctactgctgcctgcaGGCcg                                                                                                                                               >  5:86576‑M1/145‑149 (MQ=255) ccatgccgaactggcaatgtcgctgatggcctcgggcatgctggatgactacctgcgtcgccacaaggaactcgacaccgagcgcatgctgcacttcttcgccctcgacgccaccaaccccagcagcatctactgctgcctgcaGGCcg                                                                                                                                               <  3:168128‑M1/5‑1 (MQ=255)     gCACCGCGGAACAGGTGTGATCGTTCCTTGACCCAGTCGCAGAACTGGCTGATGCCATAGCGACCCAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCAc                                                                                                                                          >  2:159978/1‑149 (MQ=255)                   gtgtGATCGTTCCTTGACCCAGTCGCAGAACTGGCTGATGCCATAGCGACCCAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCAtt                                                                                                                              >  4:180464/1‑147 (MQ=255)                   gtgtGATCGTTCCTTGACCCAGTCGCAGAACTGGCTGATGCCATAGCGACCCAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCAtt                                                                                                                              <  3:180464/147‑1 (MQ=255)                   gtgtGATCGTTCCTTGACCCAGTCGCAGAACTGGCTGATGCCATAGCGACCCAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTgg                                                                                                                            >  3:44180/1‑149 (MQ=255)                          cGTTCCTTGACCCAGTCGCAGAACTGGCTGATGCCATAGCGACCCAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTggc                                                                                                                     >  8:253756/1‑149 (MQ=255)                            ttCCTTGACCCAGTCGCAGAACTGGCTGATGCCATAGCGACCCAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATg                                                                                                                                    <  2:53844/132‑1 (MQ=255)                            ttCCTTGACCCAGTCGCAGAACTGGCTGATGCCATAGCGACCCAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATg                                                                                                                                    >  1:53844/1‑132 (MQ=255)                              ccTTGACCCAGTCGCAGAACTGGCTGATGCCATAGCGACCCAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCt                                                                                                                        >  5:91650/1‑142 (MQ=255)                              ccTTGACCCAGTCGCAGAACTGGCTGATGCCATAGCGACCCAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCt                                                                                                                        <  6:91650/142‑1 (MQ=255)                                   ggcatgctggatgactacctgcgtcgccacaaggaactcgacaccgagcgcatgctgcacttcttcgccctcgacgccaccaaccccagcagcatctactgctgcctgcaGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTgca                                                                                                             >  7:273731‑M1/111‑149 (MQ=255)                                       aGTCGCAGAACTGGCTGATGCCATAGCGACCCAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTg                                                                                                                             >  2:288915/1‑128 (MQ=255)                                           gCAGAACTGGCTGATGCCATAGCGACCCAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTg                                                                                                               <  2:211471/138‑1 (MQ=255)                                           gCAGAACTGGCTGATGCCATAGCGACCCAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTg                                                                                                               >  1:211471/1‑138 (MQ=255)                                            cAGAACTGGCTGATGCCATAGCGACCCAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGcagcag                                                                                                     >  4:252227/1‑147 (MQ=255)                                                aCTGGCTGATGCCATAGCGACCCAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGAt                                                                                                <  4:44180/148‑1 (MQ=255)                                                            cATAGCGACCCAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTtg                                                                                   <  1:159978/149‑1 (MQ=255)                                                             aTAGCGACCCAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTtgg                                                                                  >  7:197864/1‑149 (MQ=255)                                                             aTAGCGACCCAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTtgg                                                                                  >  8:167938/1‑149 (MQ=255)                                                              tAGCGACCCAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTtggt                                                                                 <  7:253756/149‑1 (MQ=255)                                                              cacaaggaactcgacaccgagcgcatgctgcacttcttcgccctcgacgccaccaaccccagcagcatctactgctgcctgcaGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTgcag                                                                                                            >  7:301747‑M1/84‑123 (MQ=255)                                                              cacaaggaactcgacaccgagcgcatgctgcacttcttcgccctcgacgccaccaaccccagcagcatctactgctgcctgcaGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTgcag                                                                                                            <  8:301747‑M1/40‑1 (MQ=255)                                                                     ccAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTtggt                                                                                 >  3:37219/1‑142 (MQ=255)                                                                     ccAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTtggt                                                                                 <  4:37219/142‑1 (MQ=255)                                                                            aTTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCg                                                                    >  1:183380/1‑148 (MQ=255)                                                                             ttGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCgaa                                                                  <  7:167938/149‑1 (MQ=255)                                                                                cTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCgaagaa                                                               <  8:197864/149‑1 (MQ=255)                                                                                                tttCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATgg                                                                                                                                   <  7:14198/65‑1 (MQ=255)                                                                                                tttCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATgg                                                                                                                                   >  8:14198/1‑65 (MQ=255)                                                                                                 ttCGATCCAGGTGGCGTTGATGTTCTCCCACATGTGCGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCg                                               >  1:52474/1‑149 (MQ=255)                                                                                                 ttCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCgg                                              >  8:213254/1‑149 (MQ=255)                                                                                                                gTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGgcagca                                                                                                      <  4:184086/78‑1 (MQ=255)                                                                                                                gTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGgcagca                                                                                                      >  3:184086/1‑78 (MQ=255)                                                                                                                            ccACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTc                                          <  4:292711/126‑1 (MQ=255)                                                                                                                            ccACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTc                                          >  3:292711/1‑126 (MQ=255)                                                                                                                            ccACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTgg                             >  4:228650/1‑139 (MQ=255)                                                                                                                            ccACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTgg                             <  3:228650/139‑1 (MQ=255)                                                                                                                                     cggcggTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATcc           <  3:252227/149‑1 (MQ=255)                                                                                                                                                cGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGccc  >  2:316962/1‑147 (MQ=255)                                                                                                                                                 |                                                                                                                                                  GGTCGCACCGCGGAACAGGTGTGATCGTTCCTTGACCCAGTCGCAGAACTGGCTGATGCCATAGCGACCCAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCC  >  NC_002947/3077403‑3077691

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.