New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3077546 =	34 (0.640)	3 (0.060)	3/242	NT	9.5%	coding (307/951 nt)	PP_2687	hypothetical protein
	?	NC_002947	3077581 =	25 (0.500)					coding (272/951 nt)	PP_2687	hypothetical protein

ACCCAGTCGCAGAACTGGCTGATGCCATAGCGACCCAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGG  >  NC_002947/3077437‑3077724                                                                                                                                                  |                                                                                                                                                ggcatgctggatgactacctgcgtcgccacaaggaactcgacaccgagcgcatgctgcacttcttcgccctcgacgccaccaaccccagcagcatctactgctgcctgcaGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTgca                                                                                                                                              >  7:273731‑M1/111‑149 (MQ=255)         gCAGAACTGGCTGATGCCATAGCGACCCAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTg                                                                                                                                                >  1:211471/1‑138 (MQ=255)         gCAGAACTGGCTGATGCCATAGCGACCCAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTg                                                                                                                                                <  2:211471/138‑1 (MQ=255)          cAGAACTGGCTGATGCCATAGCGACCCAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGcagcag                                                                                                                                      >  4:252227/1‑147 (MQ=255)              aCTGGCTGATGCCATAGCGACCCAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGAt                                                                                                                                 <  4:44180/148‑1 (MQ=255)                          cATAGCGACCCAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTtg                                                                                                                    <  1:159978/149‑1 (MQ=255)                           aTAGCGACCCAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTtgg                                                                                                                   >  8:167938/1‑149 (MQ=255)                           aTAGCGACCCAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTtgg                                                                                                                   >  7:197864/1‑149 (MQ=255)                            tAGCGACCCAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTtggt                                                                                                                  <  7:253756/149‑1 (MQ=255)                            cacaaggaactcgacaccgagcgcatgctgcacttcttcgccctcgacgccaccaaccccagcagcatctactgctgcctgcaGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTgcag                                                                                                                                             <  8:301747‑M1/40‑1 (MQ=255)                            cacaaggaactcgacaccgagcgcatgctgcacttcttcgccctcgacgccaccaaccccagcagcatctactgctgcctgcaGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTgcag                                                                                                                                             >  7:301747‑M1/84‑123 (MQ=255)                                   ccAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTtggt                                                                                                                  <  4:37219/142‑1 (MQ=255)                                   ccAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTtggt                                                                                                                  >  3:37219/1‑142 (MQ=255)                                          aTTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCg                                                                                                     >  1:183380/1‑148 (MQ=255)                                           ttGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCgaa                                                                                                   <  7:167938/149‑1 (MQ=255)                                              cTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCgaagaa                                                                                                <  8:197864/149‑1 (MQ=255)                                                               ttCGATCCAGGTGGCGTTGATGTTCTCCCACATGTGCGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCg                                                                                >  1:52474/1‑149 (MQ=255)                                                               ttCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCgg                                                                               >  8:213254/1‑149 (MQ=255)                                                                              gTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGgcagca                                                                                                                                       >  3:184086/1‑78 (MQ=255)                                                                              gTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGgcagca                                                                                                                                       <  4:184086/78‑1 (MQ=255)                                                                                          ccACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTc                                                                           <  4:292711/126‑1 (MQ=255)                                                                                          ccACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTc                                                                           >  3:292711/1‑126 (MQ=255)                                                                                          ccACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTgg                                                              >  4:228650/1‑139 (MQ=255)                                                                                          ccACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTgg                                                              <  3:228650/139‑1 (MQ=255)                                                                                                   cggcggTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATcc                                            <  3:252227/149‑1 (MQ=255)                                                                                                          ctgcaggccgccaggaccaatgcccatgcagtgcgcggccTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTtgtg                                                               <  8:301747‑M2/83‑1 (MQ=255)                                                                                                          ctgcaggccgccaggaccaatgcccatgcagtgcgcggccTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTtgtg                                                               >  7:301747‑M2/41‑123 (MQ=255)                                                                                                           tgcaggccgccaggaccaatgcccatgcagtgcgcggccTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGcc                                    >  7:273731‑M2/40‑149 (MQ=255)                                                                                                              cGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGccc                                   >  2:316962/1‑147 (MQ=255)                                                                                                                   GCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTTGGGTAGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGATCCATGTGGCGAAGCAGGTACTCATCCAGCATGCCAGACGcc                             <  8:63068‑M1/148‑1 (MQ=255)                                                                                                                       aCTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGcc                             <  1:77594/144‑1 (MQ=255)                                                                                                                       aCTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGcc                             >  2:77594/1‑144 (MQ=255)                                                                                                                                  aTTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGc               >  4:16594/1‑147 (MQ=255)                                                                                                                                      gTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTc         >  4:199737/1‑149 (MQ=255)                                                                                                                                       tCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCg        <  2:183380/149‑1 (MQ=255)                                                                                                                                          tGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGccc                                   <  7:329617/119‑1 (MQ=255)                                                                                                                                          tGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGccc                                   >  8:329617/1‑119 (MQ=255)                                                                                                                                           ggcggcCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAgg                               <  7:44898/122‑1 (MQ=255)                                                                                                                                           ggcggcCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAgg                               >  8:44898/1‑122 (MQ=255)                                                                                                                                             cggccTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATgg  <  3:168128‑M2/144‑1 (MQ=255)                                                                                                                                             cggccTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATgg  >  5:86576‑M2/6‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                ACCCAGTCGCAGAACTGGCTGATGCCATAGCGACCCAGGCCATTGCTGGCGATGTTGCGCATTTCGATCCAGGTGGCGTTGATGTTCTCCCACATGT‑CGGCGGTGATACGGCCGCGCACTGCATGGGCATTGGTCCTGGCGGCCTGCAGGCAGCAGTAGATGCTGCTGGGGTTGGTGGCGTCGAGGGCGAAGAAGTGCAGCATGCGCTCGGTGTCGAGTTCCTTGTGGCGACGCAGGTAGTCATCCAGCATGCCCGAGGCCATCAGCGACATTGCCAGTTCGGCATGG  >  NC_002947/3077437‑3077724

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.