| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3088356 = | 39 (0.740) | 5 (0.100) | 5/248 | NT | 12.0% | coding (189/930 nt) | metR‑II | homocysteine‑binding DNA‑binding transcriptional regulator |
| ? | NC_002947 | 3088387 = | 35 (0.680) | coding (158/930 nt) | metR‑II | homocysteine‑binding DNA‑binding transcriptional regulator | |||||
GTGAAACCGACAGCCTGCACGAGGCCGCCGAGCGCCTGCACCTGACACAATCAGCCCTGTCGCACCAGTTCCGCGATATGGAAGAGCGCATCGGCACGCCACTGTTCGTGCGCAAATCCAGGCCGGTGCGCTTCACCAGCGCCGGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3088504‑3088356‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCAGGTGCAGGCGCTCGGCGGCCTCGTGCAGGCTGTCGGTTTCACGCAGCGCGTGGAG > NC_002947/3088387‑3088517 GTGAAACCGACAGCCTGCACGAGGCCGCCGAGCGCCTGCACCTGACACAATCAGCCCTGTCGCACCAGTTCCGCGATATGGAAGAGCGCATCGGCACGCCACTGTTCGTGCGCAAATCCAGGCCGGTGCGCTTCACCAGCGCCGGGCT > 7:16002/1‑148 CAAATCCAGGCCGGTGCGCTTCACCAGCGCCGGGCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCAGGTGCAGGCGCTCGGCGGCCTCGTGCAGGC > 7:226679/1‑143 CAAATCCAGGCCGGTGCGCTTCACCAGCGCCGGGCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCAGGTGCAGGCGCTCGGCGGCCTCGTGCAGGC < 8:226679/143‑1 TCCAGGCCGGTGCGCTTCACCAGCGCCGGGCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCAGGTGCAGGCGCTCGGCGGCCTCGTGCAGGCTGTCGGTTT > 7:69599/1‑148 CAGGCCGGTGCGCTTCACCAGCGCCGGGCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGA < 7:26694/99‑1 CAGGCCGGTGCGCTTCACCAGCGCCGGGCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGA > 8:26694/1‑99 TGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCAGGTGCAGGCGCTCGGCGGCCTCGTGCAGGCTGTCGGTTTCACGCAGCGCGTGGAG < 5:232883/133‑1 TGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCAGGTGCAGGCGCTCGGCGGCCTCGTGCAGGCTGTCGGTTTCACGCAGCGCGTGGAG > 6:232883/1‑133 GTGAAACCGACAGCCTGCACGAGGCCGCCGAGCGCCTGCACCTGACACAATCAGCCCTGTCGCACCAGTTCCGCGATATGGAAGAGCGCATCGGCACGCCACTGTTCGTGCGCAAATCCAGGCCGGTGCGCTTCACCAGCGCCGGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3088504‑3088356‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCAGGTGCAGGCGCTCGGCGGCCTCGTGCAGGCTGTCGGTTTCACGCAGCGCGTGGAG > NC_002947/3088387‑3088517 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |