New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3088356 =	39 (0.740)	5 (0.100)	5/248	NT	12.0%	coding (189/930 nt)	metR‑II	homocysteine‑binding DNA‑binding transcriptional regulator
	?	NC_002947	3088387 =	35 (0.680)					coding (158/930 nt)	metR‑II	homocysteine‑binding DNA‑binding transcriptional regulator

TCCACTGAAGGCATCAGCCACTGGTAGCAGCTGTGGCACTCGATGGCGATGTGCAGCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCAGGTGCAGGCGCTCGGCGGCCTCGTGCAGGCTGTCGGTTTCA  >  NC_002947/3088210‑3088503                                                                                                                                                   |                                                                                                                                                    tCCACTGAAGGCATCAGCCACTGGTAGCAGCTGTGGCACTCGATGGCGATGTGCAGCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAg                                                                                                                                                   <  2:20964/149‑1 (MQ=255)          ggCATCAGCCACTGGTAGCAGCTGTGGCACTCGATGGCGATGTGCAGCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCt                                                                                                                                          >  6:295906/1‑149 (MQ=255)             aTCAGCCACTGGTAGCAGCTGTGGCACTCGATGGCGATGTGCAGCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGt                                                                                                                                       >  8:225833/1‑149 (MQ=255)             aTCAGCCACTGGTAGCAGCTGTGGCACTCGATGGCGATGTGCAGCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGt                                                                                                                                       <  7:225833/149‑1 (MQ=255)              tCAGCCACTGGTAGCAGCTGTGGCACTCGATGGCGATGTGCAGCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGt                                                                                                                                       >  3:191752/1‑148 (MQ=255)                ctccacgcgctgcgtgaaaccgacagcctgcacgaggccgccgagcgcctgcacctgacacaatcagccctgtcgcaccagttccgcgatatggaagagcgcatcggcacgccactgttcgtgcgcaaatcCa                                                                                                                                                    <  5:232883‑M1/2‑1 (MQ=255)                ctccacgcgctgcgtgaaaccgacagcctgcacgaggccgccgagcgcctgcacctgacacaatcagccctgtcgcaccagttccgcgatatggaagagcgcatcggcacgccactgttcgtgcgcaaatcCa                                                                                                                                                    >  6:232883‑M1/132‑133 (MQ=255)                aGCCACTGGTAGCAGCTGTGGCACTCGATGGCGATGTGCAGCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGaa                                                                                                                                    <  4:191752/149‑1 (MQ=255)                   cACTGGTAGCAGCTGTGGCACTCGATGGCGATGTGCAGCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCAAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAgcg                                                                                                                                 >  3:65986/1‑149 (MQ=255)                              gcTGTGGCACTCGATGGCGATGTGCAGCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTg                                                                                                                       >  8:329862/1‑148 (MQ=255)                               cTGTGGCACTCGATGGCGATGTGCAGCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGa                                                                                                                     <  5:295906/149‑1 (MQ=255)                                aaaccgacagcctgcacgaggccgccgagcgcctgcacctgacacaatcagccctgtcgcaccagttccgcgatatggaagagcgcatcggcacgccactgttcgtgcgcaaatcCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGa                                                                                                                     >  7:69599‑M1/116‑148 (MQ=255)                                  tgGCACTCGATGGCGATGTGCAGCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGAt                                                                                                                    <  4:128735/147‑1 (MQ=255)                                      aCTCGATGGCGATGTGCAGCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGAttt                                                                                                                  >  5:90146/1‑145 (MQ=255)                                      aCTCGATGGCGATGTGCAGCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGAttt                                                                                                                  <  6:90146/145‑1 (MQ=255)                                       cTCGATGGCGATGTGCAGCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCa                                                                                                             >  1:90385/1‑149 (MQ=255)                                        tagATGGCGAAGTGCAGCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCCGTATTGCGGATCTCAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTCGATTTGCGCa                                                                                                             >  6:23710/3‑148 (MQ=255)                                         gcctgcacgaggccgccgagcgcctgcacctgacacaatcagccctgtcgcaccagttccgcgatatggaagagcgcatcggcacgccactgttcgtgcgcaaatcCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTg                                                                                                                 >  7:226679‑M1/107‑143 (MQ=255)                                         gcctgcacgaggccgccgagcgcctgcacctgacacaatcagccctgtcgcaccagttccgcgatatggaagagcgcatcggcacgccactgttcgtgcgcaaatcCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTg                                                                                                                 <  8:226679‑M1/37‑1 (MQ=255)                                           aTGGCGATGTGCAGCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGaa                                                                                                         >  3:148951/1‑149 (MQ=255)                                                gATGTGCAGCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTg                                                                                                    <  2:347655/149‑1 (MQ=255)                                                     gCAGCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTgc                                                                                                                >  8:208188/1‑132 (MQ=255)                                                        gCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGcc                                                                                             >  4:13680/1‑148 (MQ=255)                                                          cGTCCGGCGCAGCCCGCGGGCAGCTTGCCGAGGTGGCGTTCGGTATTGGGGAGCTGAGGCAGCACCTGATGGGGCAGCTGCAGCAGCTTCAGCCGGGCGCTGGTGAAGCGCACCGGGGTGGATTTGCGCACGAACAGTGGCGTGCCGAt                                                                                          <  5:23710/149‑1 (MQ=255)                                                            tCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCg                                                                                                                            >  5:164879/1‑113 (MQ=255)                                                            tCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCg                                                                                                                            <  6:164879/113‑1 (MQ=255)                                                            tCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGAt                                                                                          <  1:45995/147‑1 (MQ=255)                                                            tCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGAt                                                                                          >  2:45995/1‑147 (MQ=255)                                                              cGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATgcgc                                                                                      <  7:329862/149‑1 (MQ=255)                                                              cGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATgcgc                                                                                      >  6:78122/1‑149 (MQ=255)                                                                               tcagccctgtcgcaccagttccgcgatatggaagagcgcatcggcacgccactgttcgtgcgcaaatcCAGCCCGGCGCTGGTGAAGCGCACCGGCCTg                                                                                                                       >  8:26694‑M1/69‑99 (MQ=255)                                                                               tcagccctgtcgcaccagttccgcgatatggaagagcgcatcggcacgccactgttcgtgcgcaaatcCAGCCCGGCGCTGGTGAAGCGCACCGGCCTg                                                                                                                       <  7:26694‑M1/31‑1 (MQ=255)                                                                                gCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAAc                                                                    >  1:201512/1‑149 (MQ=255)                                                                                           tCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAg                                                         >  2:211296/1‑149 (MQ=255)                                                                                                ttCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCt                                                     >  1:185187/1‑148 (MQ=255)                                                                                                     tATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATtgt                                               <  3:13680/149‑1 (MQ=255)                                                                                                          cGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCt                                                     >  6:309881/1‑138 (MQ=255)                                                                                                          cGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCt                                                     <  5:309881/138‑1 (MQ=255)                                                                                                          cGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCa                                           <  2:201512/148‑1 (MQ=255)                                                                                                          cGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCa                                           <  5:78122/148‑1 (MQ=255)                                                                                                                 gAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCAGGTGCAgg                                   >  8:16002/1‑149 (MQ=255)                                                                                                                  aGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCAGGTGCAgg                                   <  4:148951/148‑1 (MQ=255)                                                                                                                           cTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGc                                                              >  2:156557/1‑112 (MQ=255)                                                                                                                                  gCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGa                                                   >  2:256775/1‑116 (MQ=255)                                                                                                                                         gcagcaGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATcgcg                                                                        <  7:101329/88‑1 (MQ=255)                                                                                                                                         gcagcaGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATcgcg                                                                        >  8:101329/1‑88 (MQ=255)                                                                                                                                             cagcTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCAGGTGCAGGCGCTCGGCGGCCTCGTGCAGGCTGTCgg       <  2:90385/149‑1 (MQ=255)                                                                                                                                               gcTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCAGGTGCAGGCGCTCGGCGGCCTCGTGCAGGCTGTCGGtt     <  1:211296/149‑1 (MQ=255)                                                                                                                                                  tCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCAGGTGCAGGCGCTCGGCGGCCTCGTGCAGGCTGTCGGTTTCa  <  4:65986/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    TCCACTGAAGGCATCAGCCACTGGTAGCAGCTGTGGCACTCGATGGCGATGTGCAGCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCAGGTGCAGGCGCTCGGCGGCCTCGTGCAGGCTGTCGGTTTCA  >  NC_002947/3088210‑3088503

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.