New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3088356 =	39 (0.740)	5 (0.100)	5/248	NT	12.0%	coding (189/930 nt)	metR‑II	homocysteine‑binding DNA‑binding transcriptional regulator
	?	NC_002947	3088387 =	35 (0.680)					coding (158/930 nt)	metR‑II	homocysteine‑binding DNA‑binding transcriptional regulator

CTGTGGCACTCGATGGCGATGTGCAGCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCAGGTGCAGGCGCTCGGCGGCCTCGTGCAGGCTGTCGGTTTCACGCAGCGCGTGGAGGGTTCGCAGGTGGC  >  NC_002947/3088240‑3088531                                                                                                                                                    |                                                                                                                                                 cTGTGGCACTCGATGGCGATGTGCAGCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGa                                                                                                                                                 <  5:295906/149‑1 (MQ=255)  aaaccgacagcctgcacgaggccgccgagcgcctgcacctgacacaatcagccctgtcgcaccagttccgcgatatggaagagcgcatcggcacgccactgttcgtgcgcaaatcCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGa                                                                                                                                                 >  7:69599‑M1/116‑148 (MQ=255)    tgGCACTCGATGGCGATGTGCAGCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGAt                                                                                                                                                <  4:128735/147‑1 (MQ=255)        aCTCGATGGCGATGTGCAGCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGAttt                                                                                                                                              >  5:90146/1‑145 (MQ=255)        aCTCGATGGCGATGTGCAGCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGAttt                                                                                                                                              <  6:90146/145‑1 (MQ=255)         cTCGATGGCGATGTGCAGCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCa                                                                                                                                         >  1:90385/1‑149 (MQ=255)          tagATGGCGAAGTGCAGCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCCGTATTGCGGATCTCAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTCGATTTGCGCa                                                                                                                                         >  6:23710/3‑148 (MQ=255)           gcctgcacgaggccgccgagcgcctgcacctgacacaatcagccctgtcgcaccagttccgcgatatggaagagcgcatcggcacgccactgttcgtgcgcaaatcCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTg                                                                                                                                             <  8:226679‑M1/37‑1 (MQ=255)           gcctgcacgaggccgccgagcgcctgcacctgacacaatcagccctgtcgcaccagttccgcgatatggaagagcgcatcggcacgccactgttcgtgcgcaaatcCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTg                                                                                                                                             >  7:226679‑M1/107‑143 (MQ=255)             aTGGCGATGTGCAGCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGaa                                                                                                                                     >  3:148951/1‑149 (MQ=255)                  gATGTGCAGCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTg                                                                                                                                <  2:347655/149‑1 (MQ=255)                       gCAGCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTgc                                                                                                                                            >  8:208188/1‑132 (MQ=255)                          gCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGcc                                                                                                                         >  4:13680/1‑148 (MQ=255)                            cGTCCGGCGCAGCCCGCGGGCAGCTTGCCGAGGTGGCGTTCGGTATTGGGGAGCTGAGGCAGCACCTGATGGGGCAGCTGCAGCAGCTTCAGCCGGGCGCTGGTGAAGCGCACCGGGGTGGATTTGCGCACGAACAGTGGCGTGCCGAt                                                                                                                      <  5:23710/149‑1 (MQ=255)                              tCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGAt                                                                                                                      <  1:45995/147‑1 (MQ=255)                              tCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGAt                                                                                                                      >  2:45995/1‑147 (MQ=255)                                cGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATgcgc                                                                                                                  >  6:78122/1‑149 (MQ=255)                                cGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATgcgc                                                                                                                  <  7:329862/149‑1 (MQ=255)                                                  gCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAAc                                                                                                >  1:201512/1‑149 (MQ=255)                                                             tCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAg                                                                                     >  2:211296/1‑149 (MQ=255)                                                                  ttCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCt                                                                                 >  1:185187/1‑148 (MQ=255)                                                                       tATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATtgt                                                                           <  3:13680/149‑1 (MQ=255)                                                                            cGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCt                                                                                 >  6:309881/1‑138 (MQ=255)                                                                            cGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCt                                                                                 <  5:309881/138‑1 (MQ=255)                                                                            cGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCa                                                                       <  2:201512/148‑1 (MQ=255)                                                                            cGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCa                                                                       <  5:78122/148‑1 (MQ=255)                                                                                   gAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCAGGTGCAgg                                                               >  8:16002/1‑149 (MQ=255)                                                                                    aGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCAGGTGCAgg                                                               <  4:148951/148‑1 (MQ=255)                                                                                             cTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGc                                                                                          >  2:156557/1‑112 (MQ=255)                                                                                                    gCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGa                                                                               >  2:256775/1‑116 (MQ=255)                                                                                                           gcagcaGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATcgcg                                                                                                    >  8:101329/1‑88 (MQ=255)                                                                                                           gcagcaGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATcgcg                                                                                                    <  7:101329/88‑1 (MQ=255)                                                                                                               cagcTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCAGGTGCAGGCGCTCGGCGGCCTCGTGCAGGCTGTCgg                                   <  2:90385/149‑1 (MQ=255)                                                                                                               caaatccaggccggtgcgcttcaccagcgccgggctgGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCAGGTGCAGGCGCTCGGCGGCCTCGTGCAGGc                                         <  8:226679‑M2/106‑1 (MQ=255)                                                                                                               caaatccaggccggtgcgcttcaccagcgccgggctgGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCAGGTGCAGGCGCTCGGCGGCCTCGTGCAGGc                                         >  7:226679‑M2/38‑143 (MQ=255)                                                                                                                 gcTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCAGGTGCAGGCGCTCGGCGGCCTCGTGCAGGCTGTCGGtt                                 <  1:211296/149‑1 (MQ=255)                                                                                                                   tccaggccggtgcgcttcaccagcgccgggctgGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCAGGTGCAGGCGCTCGGCGGCCTCGTGCAGGCTGTCGGttt                                >  7:69599‑M2/34‑148 (MQ=255)                                                                                                                    tCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCAGGTGCAGGCGCTCGGCGGCCTCGTGCAGGCTGTCGGTTTCa                              <  4:65986/149‑1 (MQ=255)                                                                                                                     caggccggtgcgcttcaccagcgccgggctgGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGa                                                                               >  8:26694‑M2/32‑99 (MQ=255)                                                                                                                     caggccggtgcgcttcaccagcgccgggctgGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGa                                                                               <  7:26694‑M2/68‑1 (MQ=255)                                                                                                                      AGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCAGGTGCAGGCGCTCGGCGGCCTCGTGCAGGCTGTCGGTTTCAc                             >  7:16002‑M1/1‑148 (MQ=255)                                                                                                                           ggCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCAGGTGCAGGCGCTCGGCGGCCTCGTGCAGGCTGTCGGTTTCACGCAgcg                       >  8:68420/1‑149 (MQ=255)                                                                                                                            gcgcTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCt                                                                                 <  4:4120/90‑1 (MQ=255)                                                                                                                            gcgcTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCt                                                                                 >  3:4120/1‑90 (MQ=255)                                                                                                                                    gAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCAGGTGCAGGCGCTCGGCGGCCTCGTGCAGGCTGTCGGTTTCACGCAGCGCGTGGAggg              >  1:346559/1‑149 (MQ=255)                                                                                                                                          cACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCAGGTGCAGGCGCTCGGCGGCCTCGTGCAGGCTGTCGGTTTCACGCAGCGCGTGGAGGGTTCg          >  5:310949/1‑147 (MQ=255)                                                                                                                                           aCCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAggg                                                                                   >  4:82350/1‑73 (MQ=255)                                                                                                                                           aCCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAggg                                                                                   <  3:82350/73‑1 (MQ=255)                                                                                                                                                ccTTGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCAGGTGCAGGCGCTCGGCGGCCTCGTGCAGGCTGTCGGTTTCACGCAGCGCGTGGAGGGTTCGCAGGTGGc  >  1:299444/1‑149 (MQ=255)                                                                                                                                                  tgGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCAGGTGCAGGCGCTCGGCGGCCTCGTGCAGGCTGTCGGTTTCACGCAGCGCGTGGAg                <  5:232883‑M2/131‑1 (MQ=255)                                                                                                                                                  tgGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCAGGTGCAGGCGCTCGGCGGCCTCGTGCAGGCTGTCGGTTTCACGCAGCGCGTGGAg                >  6:232883‑M2/3‑133 (MQ=255)                                                                                                                                                    |                                                                                                                                                 CTGTGGCACTCGATGGCGATGTGCAGCCGTCCGGCGCAGCCCCCGGCCAGCTTGCCCAGGTCCCGTTCGGTATTGCGGATCTGAGGCAGCACCTGATCGGCCAGCTGCAGCAGCTTCAGCCCGGCGCTGGTGAAGCGCACCGGCCTGGATTTGCGCACGAACAGTGGCGTGCCGATGCGCTCTTCCATATCGCGGAACTGGTGCGACAGGGCTGATTGTGTCAGGTGCAGGCGCTCGGCGGCCTCGTGCAGGCTGTCGGTTTCACGCAGCGCGTGGAGGGTTCGCAGGTGGC  >  NC_002947/3088240‑3088531

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.