| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3350614 = | 42 (0.800) | 4 (0.080) | 4/242 | NT | 9.3% | coding (1111/1404 nt) | PP_2945 | two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947 | 3350656 = | 38 (0.760) | coding (1153/1404 nt) | PP_2945 | two‑component system sensor histidine kinase/response regulator | |||||
GACGGGCTTGGTGGTGAAAAAAGGATCGAAGATTTTCTTGATGTTCTCCGGTGCTATCCCCGCGCCTGTATCTGCAACTTCGATGCACACCCAGGCGCCTTGATGAGCAGTGCCCAATGTGATGGTGCCCCGCTCGGGGC‑CCATGGC‑TTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3350766‑3350614‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgggcACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTCACCACCAAGCCCGTCGGCCAAGGTACCGGGCTAG > NC_002947/3350656‑3350785 GACGGGCTTGGTGGTGAAAAAAGGATCGAAGATTTTCTTGATGTTCTCCGGTGCTATCCCCGCGCCTGTATCTGCAACTTCGATGCACACCCAGGCGCCTTGATGAGCAGTGCCCAATGTGATGGTGCCCCGCTCGGGGC‑CCATGGC‑TT < 8:97600/149‑1 CGGGCTTGGGGGTGAAATACGGATCGTAGATTTTCTTGATGTTCTCCGGGGCTATCCCCGCGCCTGTATCTGCAACTTCGATGCACACCCAGGCGCGTTGATGAGCAGTGCCCAATGTGATGGTGCCCCGCTCGGGGC‑CCATGGC‑TTGG < 4:298086/149‑1 AAAAAAGGATCGAAGATTTTCTTGATGTTCTCCGGTGCTATCCCCGCGCCTGTATCTGCAACTTCGATGCACACCCAGGCGCCTTGATGAGCAGTGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAA < 5:93329/149‑1 TTTTCTTGATGTTCTCCGGTGCTATCCCCGCGCCTGTATCTGCAACTTCGATGCACACCCAGGCGCCTTGATGAGCAGTGCCCAATGTGATGGTGCCCCGCTCGGGGC‑CCATGGC‑TTGG < 5:283984/119‑1 TTTTCTTGATGTTCTCCGGTGCTATCCCCGCGCCTGTATCTGCAACTTCGATGCACACCCAGGCGCCTTGATGAGCAGTGCCCAATGTGATGGTGCCCCGCTCGGGGC‑CCATGGC‑TTGG > 6:283984/1‑119 TGCCCAATGTGATGGTGCCCCGCTCGGGGC‑CCATGGC‑TTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTT < 3:128606/126‑1 TGCCCAATGTGATGGTGCCCCGCTCGGGGC‑CCATGGC‑TTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTT > 4:128606/1‑126 ATGTGATGGTGCCCCGCTCGGGGC‑CCATGGC‑TTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTCACCACCAAGCCCGTCG < 6:93329/149‑1 TTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTCACCACCAAGCCCGTCGGCCAAGGTACCGGGCTAG > 1:320931/1‑136 TTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTCACCACCAAGCCCGTCGGCCAAGGTACCGGGCTAG < 2:320931/136‑1 GACGGGCTTGGTGGTGAAAAAAGGATCGAAGATTTTCTTGATGTTCTCCGGTGCTATCCCCGCGCCTGTATCTGCAACTTCGATGCACACCCAGGCGCCTTGATGAGCAGTGCCCAATGTGATGGTGCCCCGCTCGGGGC‑CCATGGC‑TTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3350766‑3350614‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgggcACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTCACCACCAAGCCCGTCGGCCAAGGTACCGGGCTAG > NC_002947/3350656‑3350785 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |