New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3350614 =	42 (0.800)	4 (0.080)	4/242	NT	9.3%	coding (1111/1404 nt)	PP_2945	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	3350656 =	38 (0.760)					coding (1153/1404 nt)	PP_2945	two‑component system sensor histidine kinase/response regulator

TGAAACATAAAGCCGACCTGGTAAAACGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTCACCACCAAGCCCGTCGGCCAAGGTACCGGGCTAGGCCTGTCCCTTTCCTATG  >  NC_002947/3350510‑3350803                                                                                                                                                     |                                                                                                                                                    tGAAACATAAAGCCGACCTGGTAAAACGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACt                                                                                                                                                   >  7:30664/1‑149 (MQ=255)            aaaaaaggatcgaagattttcttgatgttctccggtgctatccccgcgcctgtatctgcaacttcgatgcacacccaggcgccttgatgagcagtgcccaagccatgggccccgagcggggcaccatcacattgggcACTGCTCATCaa                                                                                                                                          <  5:93329‑M2/12‑1 (MQ=255)              cGACCTGGTAAAACGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGgcg                                                                                                                                      >  3:330764/1‑149 (MQ=255)                  cTGGTAAAACGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTg                                                                                                                                  >  3:40487/1‑149 (MQ=255)                      aagattttcttgatgttctccggtgctatccccgcgcctgtatctgcaacttcgatgcacacccaggcgccttgatgagcagtGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCa                                                                                                                                                     >  4:128606‑M1/84‑126 (MQ=255)                      aagattttcttgatgttctccggtgctatccccgcgcctgtatctgcaacttcgatgcacacccaggcgccttgatgagcagtGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCa                                                                                                                                                     <  3:128606‑M1/43‑1 (MQ=255)                        aaaCGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTTGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGgtgt                                                                                                                             <  4:330764/148‑1 (MQ=255)                         aaCGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGtgtg                                                                                                                            >  4:168769/1‑148 (MQ=255)                                    ccGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGc                                                                                                                <  3:309386/149‑1 (MQ=255)                                     cGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCa                                                                                                               <  4:40487/149‑1 (MQ=255)                                      gTTACCCCCTGTCGAATGCCTGCCGTCTCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCTAGCGGGGCACCATCACATTGGGCACTGCtcatc                                                                                                                                            <  8:175422/119‑1 (MQ=255)                                      gTTACCCACTGTCGAATGCCTGCCGTCTCAGATAAACAAAGTGATAATGAACCTGGTGCTCAACGCCGACCAA‑GCCATGG‑GCCCCGAGCGGGGCAACATCACATTGGGCACTGCtcatc                                                                                                                                            >  7:175422/1‑119 (MQ=255)                                             ccTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAgg                                                                                                       >  4:131954/1‑149 (MQ=255)                                                   gAATGCCTGCCGGCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCCA‑GCCATGG‑GCCCCGAGCGGGGCACCTTCACCTTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGGGGCAGCTACCGGCGCggg                                                                                                 >  5:282406/1‑149 (MQ=255)                                                        cctgccGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGa                                                                                               >  6:157697/1‑146 (MQ=255)                                                        cctgccGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGa                                                                                               <  5:157697/146‑1 (MQ=255)                                                        cctgccGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAg                                                                                            >  3:282379/1‑149 (MQ=255)                                                        cctgacGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGACCAA‑GCCATGG‑GCCCCGAGCGGTGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTTTGCATCGAAGTTGCAGATACAGTCGCGGGGATAg                                                                                            >  5:35185/1‑149 (MQ=255)                                                          tgccGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCgg                                                                                                  <  3:328272/141‑1 (MQ=255)                                                          tgccGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCgg                                                                                                  >  4:328272/1‑141 (MQ=255)                                                                         aCCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCggg                                                                                                 <  3:247274/127‑1 (MQ=255)                                                                         aCCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCggg                                                                                                 >  4:247274/1‑127 (MQ=255)                                                                         aCCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAAc                                                                                 <  1:117429/143‑1 (MQ=255)                                                                         aCCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAAc                                                                                 >  2:117429/1‑143 (MQ=255)                                                                         aCCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATc                                                                              >  7:166247/1‑146 (MQ=255)                                                                           cAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGaa                                                                                                                     <  2:331933/105‑1 (MQ=255)                                                                           cAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGaa                                                                                                                     >  1:331933/1‑105 (MQ=255)                                                                                gATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCAc                                                                                         >  6:76264/1‑128 (MQ=255)                                                                                 ccgatctaCCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCtt                                                                   <  1:306838/142‑1 (MQ=255)                                                                                  tAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTc                                                                  <  8:30664/149‑1 (MQ=255)                                                                                   aaTGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGTATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTc                                                                  >  8:92589/1‑148 (MQ=255)                                                                                     tGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTc                                                                  >  2:145394/1‑146 (MQ=255)                                                                                     tGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTc                                                                  <  1:145394/146‑1 (MQ=255)                                                                                      gAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATc                                                              >  1:221690/1‑149 (MQ=255)                                                                                         ccTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCtt                                                                   >  2:306838/1‑141 (MQ=255)                                                                                             ttgatgagcagtGCCCAATGTGATGGTGCCCCGCTCGGGGC‑CCATGGC‑TTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCtttttt                                                       <  5:93329‑M1/137‑1 (MQ=255)                                                                                                          tgcccaatgtgatggtgccccgctcggggcccatggcttgggcACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCtt                                                                   <  3:128606‑M2/83‑1 (MQ=255)                                                                                                          tgcccaatgtgatggtgccccgctcggggcccatggcttgggcACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCtt                                                                   >  4:128606‑M2/44‑126 (MQ=255)                                                                                                           CCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGaaaa                                                                       <  5:283984‑M1/119‑1 (MQ=255)                                                                                                           CCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGaaaa                                                                       >  6:283984‑M1/1‑119 (MQ=255)                                                                                                           CCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAACGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCCCCGGAGAACATCAAGAAAATCTACGATCCGTATTTCACCCCCAAGCCCg                                         <  4:298086‑M1/149‑1 (MQ=255)                                                                                                             AA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTCACCACCAAGCCCGTc                                       <  8:97600‑M1/149‑1 (MQ=255)                                                                                                                atgtgatggtgccccgctcggggcccatggcttgggcACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTCACCACCAAGCCCGTCg                                      <  6:93329‑M2/112‑1 (MQ=255)                                                                                                                   aTGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTCACCACCAAGCCCGTCGGCCa                                  <  4:282379/149‑1 (MQ=255)                                                                                                                    atttgCCCCGAGCGGGGCACCATCACATTGTGCACTTCTCATCAAGGCGCCTGTGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGTAGAACATCAAGAAAATCTTAGATCCTTTTTTCACCACCAAGCCCGTCGGCCa                                  <  6:35185/145‑1 (MQ=255)                                                                                                                                 ggggCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTCACCACCAAGCCCGTCGGCCAAGGTACCGGGCTa                     <  3:131954/149‑1 (MQ=255)                                                                                                                                    gCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGTATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTCACCACCAAGCCCGTCGGCCAAGGTACCGGGCTAGGc                  <  7:92589/149‑1 (MQ=255)                                                                                                                                     caaaaTCACATTGGGCACTGCTCATCAAGGCGCCTGCGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACAGGAGAACATCAAGAAAATCTTCGATCCTTTTTTCACCACCAAGCCCGACGGCCAAGCTACCCGGCTAGccc                 >  7:65250/5‑149 (MQ=255)                                                                                                                                     cACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTCACCACCAAGCCCGTCGGCCAAGGTACCGGGCTAGGcc                 <  8:166247/149‑1 (MQ=255)                                                                                                                                      aCCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTCACCACCAAGCCCGTCGGCCAAGGTACCGGGCTAGGCCt                <  2:221690/149‑1 (MQ=255)                                                                                                                                               ttgggcACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTCACCACCAAGCCCGTCGGCCAAGGTACCGGGCTAg                    <  2:320931‑M2/130‑1 (MQ=255)                                                                                                                                               ttgggcACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTCACCACCAAGCCCGTCGGCCAAGGTACCGGGCTAg                    >  1:320931‑M2/7‑136 (MQ=255)                                                                                                                                                    cACTGATGATCAATGCGCCTGGGTGTGCATCGAATTTGCAGATTCTGGCGCGGGGATAGCAGCGGAGAAGATCAATAAAATCTTCGATCCTTTTTTCAGCACGAAGCCCGTCGGCCAAGGTATCGGGCTAGGCCTGTAGCTTTCCTATg  <  8:65250/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    TGAAACATAAAGCCGACCTGGTAAAACGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTTCACCACCAAGCCCGTCGGCCAAGGTACCGGGCTAGGCCTGTCCCTTTCCTATG  >  NC_002947/3350510‑3350803

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.