| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3350614 = | 42 (0.800) | 4 (0.080) | 4/242 | NT | 9.3% | coding (1111/1404 nt) | PP_2945 | two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947 | 3350656 = | 38 (0.760) | coding (1153/1404 nt) | PP_2945 | two‑component system sensor histidine kinase/response regulator | |||||
ATTGACTCCACGCTTAACATCGTCGCGAGCGAGCTGAAACATAAAGCCGACCTGGTAAAACGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTT > NC_002947/3350476‑3350750 | aTTGACTCCACGCTTAACATCGTCGCGAGCGAGCTGAAACATAAAGCCGACCTGGTAAAACGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCAt < 1:2637/149‑1 (MQ=255) ctagcccggtaccttggccgacgggcttggtggtgaaaaaaggatcgaagattttcttgatgttctccggtgctatccccgcgcctgtatctgcaacttcgatgcacacccaggcgccttgatgagcagtGCCCaa > 1:320931‑M1/131‑136 (MQ=255) ctagcccggtaccttggccgacgggcttggtggtgaaaaaaggatcgaagattttcttgatgttctccggtgctatccccgcgcctgtatctgcaacttcgatgcacacccaggcgccttgatgagcagtGCCCaa < 2:320931‑M1/6‑1 (MQ=255) cACGCTTAACATCGTCGCGAGCGAGCTGAAACATAAAGCCGACCTGGTAAAACGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑Gcccc < 2:266395/148‑1 (MQ=255) gtcgCGAGCGAGCTGAAACATAAAGCCGACCTGGTAAAACGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCAt < 8:284909/149‑1 (MQ=255) cgacgggcttggtggtgaaaaaaggatcgaagattttcttgatgttctccggtgctatccccgcgcctgtatctgcaacttcgatgcacacccaggcgccttgatgagcagtGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACAt < 6:93329‑M1/37‑1 (MQ=255) agcgagcTGAAACATAAAGCCGACCTGGTAAAACGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACAtt > 3:98580/1‑149 (MQ=255) cTGAAACATAAAGCCGACCTGGTAAAACGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTg < 8:36164/144‑1 (MQ=255) cTGAAACATAAAGCCGACCTGGTAAAACGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTg > 7:36164/1‑144 (MQ=255) tGAAACATAAAGCCGACCTGGTAAAACGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACt > 7:30664/1‑149 (MQ=255) cGACCTGGTAAAACGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGgcg > 3:330764/1‑149 (MQ=255) cTGGTAAAACGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTg > 3:40487/1‑149 (MQ=255) aagattttcttgatgttctccggtgctatccccgcgcctgtatctgcaacttcgatgcacacccaggcgccttgatgagcagtGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCa > 4:128606‑M1/84‑126 (MQ=255) aagattttcttgatgttctccggtgctatccccgcgcctgtatctgcaacttcgatgcacacccaggcgccttgatgagcagtGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCa < 3:128606‑M1/43‑1 (MQ=255) aaaCGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTTGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGgtgt < 4:330764/148‑1 (MQ=255) aaaCGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGTCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTggg > 7:4216/1‑122 (MQ=255) aaaCGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGTCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTggg < 8:4216/122‑1 (MQ=255) aaCGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGtgtg > 4:168769/1‑148 (MQ=255) ccGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGc < 3:309386/149‑1 (MQ=255) cGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCa < 4:40487/149‑1 (MQ=255) gTTACCCCCTGTCGAATGCCTGCCGTCTCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCTAGCGGGGCACCATCACATTGGGCACTGCtcatc < 8:175422/119‑1 (MQ=255) gTTACCCACTGTCGAATGCCTGCCGTCTCAGATAAACAAAGTGATAATGAACCTGGTGCTCAACGCCGACCAA‑GCCATGG‑GCCCCGAGCGGGGCAACATCACATTGGGCACTGCtcatc > 7:175422/1‑119 (MQ=255) cccTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACAtt < 2:136508/99‑1 (MQ=255) cccTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACAtt > 1:136508/1‑99 (MQ=255) ccTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAgg > 4:131954/1‑149 (MQ=255) gAATGCCTGCCGGCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCCA‑GCCATGG‑GCCCCGAGCGGGGCACCTTCACCTTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGGGGCAGCTACCGGCGCggg > 5:282406/1‑149 (MQ=255) cctgccGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGa < 5:157697/146‑1 (MQ=255) cctgccGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGa > 6:157697/1‑146 (MQ=255) cctgccGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAg > 3:282379/1‑149 (MQ=255) cctgacGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGACCAA‑GCCATGG‑GCCCCGAGCGGTGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTTTGCATCGAAGTTGCAGATACAGTCGCGGGGATAg > 5:35185/1‑149 (MQ=255) tgccGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCgg > 4:328272/1‑141 (MQ=255) tgccGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCgg < 3:328272/141‑1 (MQ=255) aCCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCggg > 4:247274/1‑127 (MQ=255) aCCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCggg < 3:247274/127‑1 (MQ=255) aCCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAAc < 1:117429/143‑1 (MQ=255) aCCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAAc > 2:117429/1‑143 (MQ=255) aCCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATc > 7:166247/1‑146 (MQ=255) cAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGaa < 2:331933/105‑1 (MQ=255) cAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGaa > 1:331933/1‑105 (MQ=255) gATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCAc > 6:76264/1‑128 (MQ=255) ccgatctaCCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCtt < 1:306838/142‑1 (MQ=255) tAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTc < 8:30664/149‑1 (MQ=255) aaTGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGTATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTc > 8:92589/1‑148 (MQ=255) tGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTc > 2:145394/1‑146 (MQ=255) tGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTc < 1:145394/146‑1 (MQ=255) gAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATc > 1:221690/1‑149 (MQ=255) ccTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCtt > 2:306838/1‑141 (MQ=255) ttgatgagcagtGCCCAATGTGATGGTGCCCCGCTCGGGGC‑CCATGGC‑TTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCtttttt < 5:93329‑M1/137‑1 (MQ=255) | ATTGACTCCACGCTTAACATCGTCGCGAGCGAGCTGAAACATAAAGCCGACCTGGTAAAACGGTACCAGCCGTTACCCCCTGTCGAATGCCTGCCGTCGCAGATCAACCAAGTGATAATGAACCTGGTGCTCAACGCCGCCCAA‑GCCATGG‑GCCCCGAGCGGGGCACCATCACATTGGGCACTGCTCATCAAGGCGCCTGGGTGTGCATCGAAGTTGCAGATACAGGCGCGGGGATAGCACCGGAGAACATCAAGAAAATCTTCGATCCTTTTTT > NC_002947/3350476‑3350750 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |