New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3516322	42 (0.800)	3 (0.060)	3/246	NT	7.3%	intergenic (+362/‑773)	PP_5576/PP_5578	hypothetical protein/hypothetical protein
	?	NC_002947	= 3516373	35 (0.680)					intergenic (+413/‑722)	PP_5576/PP_5578	hypothetical protein/hypothetical protein

GCTGGGAAACCCTCAGCGGCAAACCGCGCGTGGTCGAGCACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3516173‑3516322 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtgTTCGTCCAGCTCGATGGCGTAACGCTCGCCGCCATAATCGCGGCTGGCGACCACGCGGTGGTCGGCGTTGTACTGCACTTCCAGCTCGCGGCCAAGTACGTCGGTGGCCCAGCTGGTGCGGCTATCAGCGGAAGTGGTAGTGCTC  <  NC_002947/3516373‑3516229                                                                                                                                                                                                                                                                                                         GCTGGGAAACCCTCAGCGGCAAACCGCGCGTGGTCGAGCACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGT                                                                                                                                                    >  1:340187/1‑149  CTGGGAAACCCTCAGCGGCAAACCGCGCGTGGTCGAGCACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTG                                                                                                                                                   >  7:58973/1‑149                                                  CGACGGCGAGCACTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGTTCGTCCAGCTCGATGGCGTAACGCTCGCCGCCATAATCGCGGCTGGC                                                                                                   <  8:58973/149‑1                                                              CTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGTTCGTCCAGCTCGATGGCGTAACGCTCGCCGCCATAATCGCGGCTGGCGACCACGCGGTG                                                                                       >  7:75386/1‑149                                                                 CCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGTTCGTCCAGCTCGATGGCGTAACGCTCGCCGCCATAATCGCGGCTGGCGACCACGCGGTGGTC                                                                                    <  8:75386/149‑1                                                                                                                                                   CGTGTTCGTCCAGCTCGATGTCGTAACGCTCGCCGCCATAATCGCGGCTGGCGACCACGCGGTGGTCGGCGTTGTACTGCACTTCCAGCTCGCGGCCAAGTACGTCGGTGGCCCAGCTGGTGCGGCTATCAGCGGAAGTGGTAGTGCTC  <  5:192293/149‑1                                                                                                                                                                                                                                                                                                         GCTGGGAAACCCTCAGCGGCAAACCGCGCGTGGTCGAGCACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3516173‑3516322 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtgTTCGTCCAGCTCGATGGCGTAACGCTCGCCGCCATAATCGCGGCTGGCGACCACGCGGTGGTCGGCGTTGTACTGCACTTCCAGCTCGCGGCCAAGTACGTCGGTGGCCCAGCTGGTGCGGCTATCAGCGGAAGTGGTAGTGCTC  <  NC_002947/3516373‑3516229

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.