| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3516322 | 42 (0.800) | 3 (0.060) | 3/246 | NT | 7.3% | intergenic (+362/‑773) | PP_5576/PP_5578 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | = 3516373 | 35 (0.680) | intergenic (+413/‑722) | PP_5576/PP_5578 | hypothetical protein/hypothetical protein | |||||
CTGGGAAACCCTCAGCGGCAAACCGCGCGTGGTCGAGCACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCTCCCGCTTGCTCGAAGAGACCGATCCGC > NC_002947/3516174‑3516467 | cTGGGAAACCCTCAGCGGCAAACCGCGCGTGGTCGAGCACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTG > 7:58973‑M1/1‑149 (MQ=255) ggAAACCCTCAGCTGCAAACCGCGGGGGTGCGAGCACTCGTCCAGCGACGGCGAGCACTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTc < 6:97226/149‑1 (MQ=21) ggAAACCCTCAGCGGCAAACCGCGCGTGGTCGAGCACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTc < 2:340187/149‑1 (MQ=255) aaaCCCTCAGCGGCAAACCGCGCGTGGTCGAGCACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTCATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGc < 1:257979/149‑1 (MQ=255) aaCCCTCAGCGGCAAACCGCGCGTGGTCGAGCACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGcc < 3:261297/149‑1 (MQ=255) ccTCAGCGGCAAACCGCGCGTGGTCGATCACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCCGGTGAGCTGGAAGTGCAGTACAACGCCGACCACGCGGTGGTCggcgt < 1:248808/149‑5 (MQ=21) tCAGCGGCAAACCGCGCGTGGTCGAGCACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCcg > 2:141238/1‑149 (MQ=255) cAAACCGCGCGTGGTCGAGCACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTAt < 4:246980/149‑1 (MQ=255) aaaCCGCGCGTGGTCGAGCACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATg < 6:124066/149‑1 (MQ=255) aaaCCGCGCGTGGTCGAGCACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATg < 2:85964/149‑1 (MQ=255) aaaCCGCGCGTGGTCGAGCACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATg > 1:85964/1‑149 (MQ=255) tCGAGCACTGGACCAGCGACGGCGATCACTACCACTTCCGCTGATAGCCGCCCCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGGGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTa < 5:298020/149‑1 (MQ=255) gAGCACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTAc < 7:136188/148‑1 (MQ=255) gAGCACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACACCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTAc < 6:21759/148‑1 (MQ=255) cAGCGACGGCGAGCACTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCCCCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTg > 1:329308/1‑149 (MQ=255) cAGCGACGGCGAGCACTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTg > 3:279994/1‑149 (MQ=255) cAGCGACGGCGAGCACTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTg > 3:144771/1‑149 (MQ=255) gCGACGGCGAGCACTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGa > 8:255869/1‑149 (MQ=255) cGACGGCGAGCACTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGttcgtccagctcgatggcgtaacgctcgccgccataatcgcggctggc < 8:58973‑M1/149‑49 (MQ=255) gAGCACTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGACATCGAGCTGGACGAAcacg < 5:192293‑M2/149‑5 (MQ=255) gCACTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGACATCGAGCTGGACGAACACGGc < 6:192293/149‑1 (MQ=255) cTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGttcgtccagctcgatggcgtaacgctcgccgccataatcgcggctggcgaccacgcggtg > 7:75386‑M1/1‑89 (MQ=255) tACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTAc > 1:232349/1‑121 (MQ=255) tACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTAc < 2:232349/121‑1 (MQ=255) tACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAata > 3:220082/1‑149 (MQ=255) tACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAata > 5:63885/1‑149 (MQ=255) ccACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGttcgtccagctcgatggcgtaacgctcgccgccataatcgcggctggcgaccacgcggtggtc < 8:75386‑M1/149‑64 (MQ=255) ccACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAata < 3:105227/147‑1 (MQ=255) cACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATgg < 1:141238/149‑1 (MQ=255) ttCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTg > 2:70263/1‑149 (MQ=255) cGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGc < 4:279994/148‑1 (MQ=40) gCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCt < 7:255869/149‑1 (MQ=39) gCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCg < 4:144771/149‑1 (MQ=37) gCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCg > 7:210029/1‑149 (MQ=37) aCCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGa < 7:162818/149‑1 (MQ=37) cAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACg < 4:220082/149‑1 (MQ=37) ccACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGc > 5:128168/1‑149 (MQ=37) aCCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCt > 3:185698/1‑149 (MQ=37) aCTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTc > 1:164555/1‑148 (MQ=35) cTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCaa < 8:210029/149‑1 (MQ=34) ggCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGc > 3:127827/1‑121 (MQ=32) ggCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAg < 4:185698/147‑1 (MQ=32) ggCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAg < 1:70263/147‑1 (MQ=32) gAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTAcgacga < 2:329308/149‑1 (MQ=32) aGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCTccc < 6:128168/149‑1 (MQ=32) cAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGc < 4:63862/112‑1 (MQ=32) cAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGc > 3:63862/1‑112 (MQ=32) tccGACCACCGCGTGGTCGCCAGCAGCGATTATGGCGGCCAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCTCCCTATTGCTCGaa > 2:288826/2‑147 (MQ=255) gcGACCACGCGGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCTCCCGCTTGCTCGaa > 6:222774/2‑146 (MQ=255) gACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAAcacgcggtggtcggcgttgtactgcacttccagctcgcggccaagtacgtcggtggcccagctggtgcggctatcagcggaagtgg < 8:75386‑M2/149‑87 (MQ=255) accaccGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCTCCCGCTTGCTCGAAGAGAcc < 2:164555/149‑1 (MQ=34) caccGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAAcacgcggtggtcggcgttgtactgcacttccagctcgcggccaagtacgtcggtggcccagctggtgcggctatcagcggaagtggtag > 7:75386‑M2/1‑60 (MQ=255) cgcgTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCTCCCGCTTGCTCGAAGAGACCGATcc < 1:265557/149‑1 (MQ=37) cgTGttcgtccagctcgatgtcgtaacgctcgccgccataatcgcggctggcgaccacgcggtggtcggcgttgtactgcacttccagctcgcggccaagtacgtcggtggcccagctggtgcggctatcagcggaagtggtagtgctc < 5:192293‑M1/149‑146 (MQ=255) | CTGGGAAACCCTCAGCGGCAAACCGCGCGTGGTCGAGCACTGGACCAGCGACGGCGAGCACTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCC‑GCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCTCCCGCTTGCTCGAAGAGACCGATCCGC > NC_002947/3516174‑3516467 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |