New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3516322	42 (0.800)	3 (0.060)	3/246	NT	7.3%	intergenic (+362/‑773)	PP_5576/PP_5578	hypothetical protein/hypothetical protein
	?	NC_002947	= 3516373	35 (0.680)					intergenic (+413/‑722)	PP_5576/PP_5578	hypothetical protein/hypothetical protein

GAGCACTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCTCCCGCTTGCTCGAAGAGACCGATCCGCTGGGCCGCAAGACCACCTACGAATATCATCACCTGACCACGCTGGTGAACCAGG  >  NC_002947/3516229‑3516521                                                                                                                                                 |                                                                                                                                                     gAGCACTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGACATCGAGCTGGACGAAcacg                                                                                                                                                  <  5:192293‑M2/149‑5 (MQ=255)   gCACTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGACATCGAGCTGGACGAACACGGc                                                                                                                                                <  6:192293/149‑1 (MQ=255)       tACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAata                                                                                                                                            >  5:63885/1‑149 (MQ=255)       tACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAata                                                                                                                                            >  3:220082/1‑149 (MQ=255)         ccACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAata                                                                                                                                            <  3:105227/147‑1 (MQ=255)          cACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATgg                                                                                                                                         <  1:141238/149‑1 (MQ=255)             ttCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTg                                                                                                                                      >  2:70263/1‑149 (MQ=255)                cGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGc                                                                                                                                    <  4:279994/148‑1 (MQ=40)                 gCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCt                                                                                                                                  <  7:255869/149‑1 (MQ=39)                           gCACCAGCTGGGCCACCGACGTACTTGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCg                                                                                                                        >  7:210029/1‑149 (MQ=37)                           gCACCAGCTGGGCCACCGACGTACTTGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCg                                                                                                                        <  4:144771/149‑1 (MQ=37)                             aCCAGCTGGGCCACCGACGTACTTGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGa                                                                                                                      <  7:162818/149‑1 (MQ=37)                               cAGCTGGGCCACCGACGTACTTGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACg                                                                                                                    <  4:220082/149‑1 (MQ=37)                                       ccACCGACGTACTTGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGc                                                                                                            >  5:128168/1‑149 (MQ=37)                                         aCCGACGTACTTGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCt                                                                                                          >  3:185698/1‑149 (MQ=37)                                                 aCTTGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTc                                                                                                   >  1:164555/1‑148 (MQ=35)                                                  cTTGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCaa                                                                                                 <  8:210029/149‑1 (MQ=34)                                                     ggCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGc                                                                                                                          >  3:127827/1‑121 (MQ=32)                                                     ggCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAg                                                                                                <  4:185698/147‑1 (MQ=32)                                                     ggCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAg                                                                                                <  1:70263/147‑1 (MQ=32)                                                           gAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTAcgacga                                                                                        <  2:329308/149‑1 (MQ=32)                                                                   aGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCTccc                                                                                <  6:128168/149‑1 (MQ=32)                                                                            cAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGc                                                                                                            >  3:63862/1‑112 (MQ=32)                                                                            cAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGc                                                                                                            <  4:63862/112‑1 (MQ=32)                                                                                tccGACCACCGCGTGGTCGCCAGCAGCGATTATGGCGGCCAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCTCCCTATTGCTCGaa                                                                     >  2:288826/2‑147 (MQ=255)                                                                                 gcGACCACGCGGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCTCCCGCTTGCTCGaa                                                                     >  6:222774/2‑146 (MQ=255)                                                                                   gACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAAcacgcggtggtcggcgttgtactgcacttccagctcgcggccaagtacgtcggtggcccagctggtgcggctatcagcggaagtgg                                                                <  8:75386‑M2/149‑87 (MQ=255)                                                                                    accaccGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCTCCCGCTTGCTCGAAGAGAcc                                                               <  2:164555/149‑1 (MQ=34)                                                                                      caccGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAAcacgcggtggtcggcgttgtactgcacttccagctcgcggccaagtacgtcggtggcccagctggtgcggctatcagcggaagtggtag                                                             >  7:75386‑M2/1‑60 (MQ=255)                                                                                         cgcgTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCTCCCGCTTGCTCGAAGAGACCGATcc                                                          <  1:265557/149‑1 (MQ=37)                                                                                               gTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCTAGCTGGTCGAACACGTCAATATGGTTGGCCTGACCTTGCCGGAGGGTAACCGCCTGCAATTCAAGTACGACGAATTCTCCCGCTTGCTCGAAGATACCGATCCGCTggg                                                    <  1:288826/149‑1 (MQ=11)                                                                                                  gCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAAcacgcggtggtcggcgttgtactgcacttccagctcgcggccaagtacgtcggtggcccagctggtgcggctatcagcggaagtggtagtgctcgccgtcg                                                 <  8:58973‑M2/149‑102 (MQ=255)                                                                                                     aGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCTCCCGCTTGCTCGAAGAGACCGATCCGCTGGGCCGCaa                                              <  5:222774/149‑1 (MQ=37)                                                                                                        cgcgATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCTCCCGCTTGCTCGAAGAGACCGATCCGCTGGGCCGCAAGac                                           >  8:134029/1‑149 (MQ=37)                                                                                                         gcgATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCTCCCGCTTGCTCGAAGAGAc                                                                <  7:168301/127‑1 (MQ=35)                                                                                                         gcgATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCTCCCGCTTGCTCGAAGAGAc                                                                >  8:168301/1‑127 (MQ=35)                                                                                                                 ttcggcgAGCGTAACGCAATCCAGATGGACGAACACGGCAATATTGATGACCTGAACTTGCCGTAATGTAAACGCCTGCAATTCAAGTACGACAAATTCTACCTCTTGCTATAATATACATATCCGCTGGGCCGCAAGACCACCTACg                                   >  8:149504/3‑148 (MQ=9)                                                                                                                       gAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCTCCCGCTTGCTCGAAGAGACCGATCCGCTGGGCCGCAAGACCACCTACGa                                  <  1:182642/143‑1 (MQ=40)                                                                                                                       gAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCTCCCGCTTGCTCGAAGAGACCGATCCGCTGGGCCGCAAGACCACCTACGa                                  >  2:182642/1‑143 (MQ=40)                                                                                                                                  cATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCTCCCGCTTGCTCGAAGAGACCGGTCCGCTGGGCCGCAAGACCACCTACGAATATCATCACCTGACCa                 >  3:315143/1‑149 (MQ=255)                                                                                                                                                 acacGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCTCCCGCTTGCTCGAAGAGACCGATCCGCTGGGCCGCAAGACCACCTACGAATATCATCACCTGACCACGCTGGTGAACCAgg  >  7:140814/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                     GAGCACTACCACTTCCGCTGATAGCCGCACCAGCTGGGCCACCGACGTACTTGGCCGCGAGCTGGAAGTGCAGTACAACGCCGACCACCGCGTGGTCGCCAGCCGCGATTATGGCGGCGAGCGTTACGCCATCGAGCTGGACGAACACGGCAATATGGTTGGCCTGACCTTGCCGGACGGTAACCGCCTGCAATTCAAGTACGACGAATTCTCCCGCTTGCTCGAAGAGACCGATCCGCTGGGCCGCAAGACCACCTACGAATATCATCACCTGACCACGCTGGTGAACCAGG  >  NC_002947/3516229‑3516521

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.