New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3668091	36 (0.680)	4 (0.080)	4/242	NT	10.4%	coding (596/1368 nt)	PP_3231	hypothetical protein
	?	NC_002947	= 3668137	35 (0.700)					coding (550/1368 nt)	PP_3231	hypothetical protein

GCGGCGATGATTACACGGGCATTCTGCGTGGCGTTGAAAAAAGCTTCATCATTGCGGACAAGCCCTGACAATTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3667938‑3668091 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgtCGCCGCTACGGTTGCCTGACGCCTTGGCAGGACGACCCCGCGCTGTACGGGCACTTTGTCGAGCACAGTGGCGTCATGCCATGCGAGCAACCGGTGATCCAGCAACTGAATGCCATGCTCGCCGAGCAATTGTCAGGGCTTGTCCG  <  NC_002947/3668137‑3667992                                                                                                                                                                                                                                                                                                              GCGGCGATGATTACACGGGCATTCTGCGTGGCGTTGAAAAAAGCTTCATCATTGCGGACAAGCCCTGACAATTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTG                                                                                                                                                         >  7:62667/1‑149      GATGATTACACGGGCATTCTGCGTGGCGTTGAAAAAAGCTTCATCATTGCGGACAAGCCCTGACAATTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCG                                                                                                                                                     >  5:48973/1‑148                                                 TCATTGCGGACAAGCCCTGACAATTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTCGCCGCTACGGTTGCCTGACGCCTTGGCAGGACGACCCCGCGC                                                                                                         >  7:265970/1‑149                                                               CCCTGACAATTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTCGCCGCTACGGTTGCCTGACGCCTTGGCAGGACGACCCCGCGCTGTATGGG                                                                                                 >  5:276050/1‑143                                                               CCCTGACAATTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTCGCCGCTACGGTTGCCTGACGCCTTGGCAGGACGACCCCGCGCTGTATGGG                                                                                                 <  6:276050/143‑1                                                                    ACAATTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTCGCCGCTACGGTTGCCTGACGCCTTGGCAGGACGACCCCGCGCTGTACGGGCACTTTGTCGA                                                                                      <  8:265970/149‑1                                                                                                                                                     GCCCGTCGCCGCTACGGTTGCCTGACGCCTTGGCAGGACGACCCCGCGCTGTA                                                                                                     <  7:299776/53‑1                                                                                                                                                     GCCCGTCGCCGCTACGGTTGCCTGACGCCTTGGCAGGACGACCCCGCGCTGTA                                                                                                     >  8:299776/1‑53                                                                                                                                                       CCGTCGCCGCTACTGTTGCCTGACGCCTTGGCAGGACGACCCCGCGCTGTACGGGCACTTTGTCGAGCACAGTGGCGTCATGCCATGCGAGCAACCGGTGATCCAGCAACTGAATGCCATGCTCGCCGAGCAATTGTCAGGGCTTGTCC   <  2:320733/149‑1                                                                                                                                                         GTCGCCGCTACGGTTGCCTGACGCCTTGGCAGGACGACCCCGCGCTGTACGGGCACTTTGTCGAGCACAGTGGCGTCATGCCATGCGAGCAACCGGTGATCCAGCAACTGAATGCCATGCTCGCCGAGCAATTGTCAGGGCTTGTCCG  >  3:335011/1‑148                                                                                                                                                                                                                                                                                                              GCGGCGATGATTACACGGGCATTCTGCGTGGCGTTGAAAAAAGCTTCATCATTGCGGACAAGCCCTGACAATTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3667938‑3668091 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgtCGCCGCTACGGTTGCCTGACGCCTTGGCAGGACGACCCCGCGCTGTACGGGCACTTTGTCGAGCACAGTGGCGTCATGCCATGCGAGCAACCGGTGATCCAGCAACTGAATGCCATGCTCGCCGAGCAATTGTCAGGGCTTGTCCG  <  NC_002947/3668137‑3667992

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.