New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3668091	36 (0.680)	4 (0.080)	4/242	NT	10.4%	coding (596/1368 nt)	PP_3231	hypothetical protein
	?	NC_002947	= 3668137	35 (0.700)					coding (550/1368 nt)	PP_3231	hypothetical protein

ACGGGCATTCTGCGTGGCGTTGAAAAAAGCTTCATCATTGCGGACAAGCCCTGACAATTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCCGCGGAATTCC  >  NC_002947/3667952‑3668237                                                                                                                                            |                                                                                                                                                   acGGGCATTCTGCGTGGCGTTGAAAAAAGCTTCATCATTGCGGACAAGCCCTGACAATTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCgg                                                                                                                                           >  3:69208/1‑149 (MQ=255)   gggCATTCTGCGTGGCGTTGAAAAAAGCTTCATCATTGCGGACAAGCCCTGACAATTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCgggg                                                                                                                                         >  4:335011/1‑149 (MQ=255)        ttCTGCGTGGCGTTGAAAAAAGCTTCATCATTGCGGACAAGCCCTGACAATTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGgtcgtc                                                                                                                                    <  4:69208/149‑1 (MQ=255)                   gTTGAAAAAAGCTTCATCATTGCGGACAAGCCCTGACAATTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCg                                                                                                                         >  1:254728/1‑149 (MQ=255)                       aaaaaaGCTTCATCATTGCGGACAAGCCCTGACAATTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAg                                                                                                                     >  1:257890/1‑149 (MQ=255)                       aaaaaaGCTTCATCATTGCGGACAAGCCCTGACAATTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAg                                                                                                                     <  6:314566/149‑1 (MQ=255)                               ttCATCATTGCGGACAAGCCCTGACAATTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGCTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGACCGTAAAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCg                                                                                                              >  2:164598/1‑148 (MQ=255)                                   tcatTGCGGACAAGCCCTGACAATTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTcgccgctacggttgcctgacgccttggcaggacgaccccgcgc                                                                                                         >  7:265970‑M1/1‑106 (MQ=255)                                         cGGACAAGCCCTGACAATTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGac                                                                                                    >  3:335011‑M2/1‑146 (MQ=255)                                          ggACAAGCCCTGACAATTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACAGTAGCGGCGacgg                                                                                                  <  2:320733‑M2/149‑5 (MQ=255)                                                 cccTGACAATTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTcgccgctacggttgcctgacgccttggcaggacgaccccgcgctgtatggg                                                                                                 <  6:276050‑M1/143‑52 (MQ=255)                                                 cccTGACAATTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTcgccgctacggttgcctgacgccttggcaggacgaccccgcgctgtatggg                                                                                                 >  5:276050‑M1/1‑92 (MQ=255)                                                   cTGACAATTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATgg                                                                                         >  8:132817/1‑149 (MQ=255)                                                   cTGACAATTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATgg                                                                                         >  4:106414/1‑149 (MQ=255)                                                      aCAATTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTcgccgctacggttgcctgacgccttggcaggacgaccccgcgctgtacgggcactttgtcga                                                                                      <  8:265970‑M1/149‑63 (MQ=255)                                                        aaTTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTACATGGGCCAg                                                                                    <  8:62667/149‑1 (MQ=255)                                                             cTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGc                                                                                <  3:106414/148‑1 (MQ=255)                                                              tCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCgg                                                                              >  1:347754/1‑149 (MQ=255)                                                                ggCGAGCATGGCATTCAGTTGCGGGATAACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTACCGGCGACGGGCGTCATGGGCCCGCTGCCGGt                                                                            >  7:222515/1‑149 (MQ=255)                                                                     gCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGAcc                                                                       >  8:127988/1‑149 (MQ=255)                                                                           cATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGgtc                                                                                                                                       >  8:277080/1‑79 (MQ=255)                                                                           cATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGgtc                                                                                                                                       <  7:277080/79‑1 (MQ=255)                                                                            aTTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATgg                                                                                         <  3:1434/124‑1 (MQ=255)                                                                            aTTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATgg                                                                                         >  4:1434/1‑124 (MQ=255)                                                                               cAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGGCGTCCTGACAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGa                                                              <  1:164598/148‑1 (MQ=255)                                                                                        gATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAg                                                                                                           <  5:135587/94‑1 (MQ=255)                                                                                        gATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAg                                                                                                           >  6:135587/1‑94 (MQ=255)                                                                                            aCCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACtt                                                 >  5:185789/1‑148 (MQ=255)                                                                                             ccGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCa                                               <  2:347754/149‑1 (MQ=255)                                                                                             ccGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCa                                               >  7:208878/1‑149 (MQ=255)                                                                                              cGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCat                                              <  7:132817/149‑1 (MQ=255)                                                                                                       gcatggcatgACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCAtggatgga                                       <  8:208878/147‑1 (MQ=255)                                                                                                         atggcatgACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCa                                               >  2:235486/1‑137 (MQ=255)                                                                                                         atggcatgACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCa                                               <  1:235486/137‑1 (MQ=255)                                                                                                         atggcatgACGCCACTGTGCTCGACAAAGTGCCCGTACAGAGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTg                                   >  6:265666/1‑149 (MQ=255)                                                                                                               tgACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAgg                             <  1:320733/149‑1 (MQ=255)                                                                                                                    ccACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTa                        <  7:127988/149‑1 (MQ=255)                                                                                                                    ccACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTa                        <  2:254728/149‑1 (MQ=255)                                                                                                                             tCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGacgggcactttgtcgagcacagtggcgtcatgccatgcgagcaaccggtgatccagcaactgaatgccatgctcgccgagcaattgt               <  8:265970‑M2/149‑88 (MQ=255)                                                                                                                               gACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAgg              <  6:48973/148‑1 (MQ=255)                                                                                                                                    aGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCcgcg         >  3:66271/1‑148 (MQ=255)                                                                                                                                    aGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGGCCAGATACGCCAGGACGTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCcgcg         >  3:286836/1‑148 (MQ=255)                                                                                                                                     gTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCCGCgg        >  8:253820/1‑148 (MQ=255)                                                                                                                                       gCCCGTcgccgctacggttgcctgacgccttggcaggacgaccccgcgctgta                                                                                                     <  7:299776‑M1/53‑48 (MQ=255)                                                                                                                                       gCCCGTcgccgctacggttgcctgacgccttggcaggacgaccccgcgctgta                                                                                                     >  8:299776‑M1/1‑6 (MQ=255)                                                                                                                                        cccATACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGacgggcactttgtcgagcacagtggcgtcatgccatgcgagcaaccggtgatccagcaactgaatgccatgctcgccgagcaattgtcaggg          >  5:276050‑M2/1‑51 (MQ=255)                                                                                                                                        cccATACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGacgggcactttgtcgagcacagtggcgtcatgccatgcgagcaaccggtgatccagcaactgaatgccatgctcgccgagcaattgtcaggg          <  6:276050‑M2/143‑93 (MQ=255)                                                                                                                                         ccGTcgccgctactgttgcctgacgccttggcaggacgaccccgcgctgtacgggcactttgtcgagcacagtggcgtcatgccatgcgagcaaccggtgatccagcaactgaatgccatgctcgccgagcaattgtcagggcttgtcc   <  2:320733‑M1/149‑146 (MQ=255)                                                                                                                                         ccGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGAACCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCCGCGGAATTc   >  8:207525/1‑149 (MQ=255)                                                                                                                                          cGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGc                                                         <  4:273270/94‑1 (MQ=255)                                                                                                                                          cGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGc                                                         >  3:273270/1‑94 (MQ=255)                                                                                                                                           gTcgccgctacggttgcctgacgccttggcaggacgaccccgcgctgtacgggcactttgtcgagcacagtggcgtcatgccatgcgagcaaccggtgatccagcaactgaatgccatgctcgccgagcaattgtcagggcttgtccg  >  3:335011‑M1/1‑2 (MQ=255)                                                                                                                                            tACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGacgggc                                                                                                <  7:299776‑M2/53‑7 (MQ=255)                                                                                                                                            tACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGacgggc                                                                                                >  8:299776‑M2/1‑47 (MQ=255)                                                                                                                                            |                                                                                                                                                   ACGGGCATTCTGCGTGGCGTTGAAAAAAGCTTCATCATTGCGGACAAGCCCTGACAATTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCCGCGGAATTCC  >  NC_002947/3667952‑3668237

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.