New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3668091	36 (0.680)	4 (0.080)	4/242	NT	10.4%	coding (596/1368 nt)	PP_3231	hypothetical protein
	?	NC_002947	= 3668137	35 (0.700)					coding (550/1368 nt)	PP_3231	hypothetical protein

CGGACAAGCCCTGACAATTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCCGCGGAATTCCACGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCC  >  NC_002947/3667992‑3668272                                                                                                                                                  |                                                                                                                                        cGGACAAGCCCTGACAATTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGac                                                                                                                                       >  3:335011‑M2/1‑146 (MQ=255)  ggACAAGCCCTGACAATTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACAGTAGCGGCGacgg                                                                                                                                     <  2:320733‑M2/149‑5 (MQ=255)           cTGACAATTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATgg                                                                                                                            >  8:132817/1‑149 (MQ=255)           cTGACAATTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATgg                                                                                                                            >  4:106414/1‑149 (MQ=255)                aaTTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTACATGGGCCAg                                                                                                                       <  8:62667/149‑1 (MQ=255)                     cTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGc                                                                                                                   <  3:106414/148‑1 (MQ=255)                      tCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCgg                                                                                                                 >  1:347754/1‑149 (MQ=255)                        ggCGAGCATGGCATTCAGTTGCGGGATAACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTACCGGCGACGGGCGTCATGGGCCCGCTGCCGGt                                                                                                               >  7:222515/1‑149 (MQ=255)                             gCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGAcc                                                                                                          >  8:127988/1‑149 (MQ=255)                                    aTTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATgg                                                                                                                            >  4:1434/1‑124 (MQ=255)                                    aTTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATgg                                                                                                                            <  3:1434/124‑1 (MQ=255)                                       cAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGGCGTCCTGACAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGa                                                                                                 <  1:164598/148‑1 (MQ=255)                                                    aCCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACtt                                                                                    >  5:185789/1‑148 (MQ=255)                                                     ccGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCa                                                                                  >  7:208878/1‑149 (MQ=255)                                                     ccGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCa                                                                                  <  2:347754/149‑1 (MQ=255)                                                      cGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCat                                                                                 <  7:132817/149‑1 (MQ=255)                                                               gcatggcatgACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCAtggatgga                                                                          <  8:208878/147‑1 (MQ=255)                                                                 atggcatgACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCa                                                                                  <  1:235486/137‑1 (MQ=255)                                                                 atggcatgACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCa                                                                                  >  2:235486/1‑137 (MQ=255)                                                                 atggcatgACGCCACTGTGCTCGACAAAGTGCCCGTACAGAGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTg                                                                      >  6:265666/1‑149 (MQ=255)                                                                       tgACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAgg                                                                <  1:320733/149‑1 (MQ=255)                                                                            ccACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTa                                                           <  2:254728/149‑1 (MQ=255)                                                                            ccACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTa                                                           <  7:127988/149‑1 (MQ=255)                                                                                     tCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGacgggcactttgtcgagcacagtggcgtcatgccatgcgagcaaccggtgatccagcaactgaatgccatgctcgccgagcaattgt                                                  <  8:265970‑M2/149‑88 (MQ=255)                                                                                       gACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAgg                                                 <  6:48973/148‑1 (MQ=255)                                                                                            aGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCcgcg                                            >  3:66271/1‑148 (MQ=255)                                                                                            aGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGGCCAGATACGCCAGGACGTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCcgcg                                            >  3:286836/1‑148 (MQ=255)                                                                                             gTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCCGCgg                                           >  8:253820/1‑148 (MQ=255)                                                                                                cccATACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGacgggcactttgtcgagcacagtggcgtcatgccatgcgagcaaccggtgatccagcaactgaatgccatgctcgccgagcaattgtcaggg                                             <  6:276050‑M2/143‑93 (MQ=255)                                                                                                cccATACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGacgggcactttgtcgagcacagtggcgtcatgccatgcgagcaaccggtgatccagcaactgaatgccatgctcgccgagcaattgtcaggg                                             >  5:276050‑M2/1‑51 (MQ=255)                                                                                                 ccGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGAACCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCCGCGGAATTc                                      >  8:207525/1‑149 (MQ=255)                                                                                                  cGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGc                                                                                            >  3:273270/1‑94 (MQ=255)                                                                                                  cGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGc                                                                                            <  4:273270/94‑1 (MQ=255)                                                                                                    tACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGacgggc                                                                                                                                   <  7:299776‑M2/53‑7 (MQ=255)                                                                                                    tACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGacgggc                                                                                                                                   >  8:299776‑M2/1‑47 (MQ=255)                                                                                                        gcgcGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGacgggcactttgtcgagcacagtggcgtcatgccatgcgagcaaccggtgatccagcaactgaatgccatgctcgccgagcaattgtcagggcttgtccgcaatga                               >  7:265970‑M2/1‑43 (MQ=255)                                                                                                           cgGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCCGCGGAATTCCACGCggtgg                            >  7:282113/1‑149 (MQ=255)                                                                                                            ggggTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCCGCGGAATTCCACGCggtggt                           <  2:182516/149‑1 (MQ=255)                                                                                                            ggggTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCCGCGGAATTCCACGCggtggt                           <  8:282113/149‑1 (MQ=255)                                                                                                              ggTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCCGCGGAATTCCACGCGGTGGTCg                         <  2:257890/149‑1 (MQ=255)                                                                                                                     cTGCCAAGGCGTCAGGCAACCGTAGCAGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACCTCCAGGCCGCGGAATTCCACGCGGTGGTCGGTggg                    >  2:248413/1‑147 (MQ=255)                                                                                                                               gTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCCGCGGAATTCCACGCGGTGGTCGGTGGGCAGCAGGCGGtt        <  1:189322/149‑1 (MQ=255)                                                                                                                                     cAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGGCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCGGTACACATCCAGGCCGCGGAATTCCACGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGccc  <  7:207525/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                        CGGACAAGCCCTGACAATTGCTCGGCGAGCATGGCATTCAGTTGCTGGATCACCGGTTGCTCGCATGGCATGACGCCACTGTGCTCGACAAAGTGCCCGTACAGCGCGGGGTCGTCCTGCCAAGGCGTCAGGCAACCGTAGCGGCGACGGGCTTCATGGGCCAGATGCGGGTCGACCCGGTCCAGATACGCCAGGACTTCATGGATGGAATTGCGCAGGCTGTACACATCCAGGCCGCGGAATTCCACGCGGTGGTCGGTGGGCAGCAGGCGGTTGTGCCC  >  NC_002947/3667992‑3668272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.